PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105317_P01
Common NameLOC100304013
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 234aa    MW: 25511 Da    PI: 4.5361
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105317_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.65.7e-131693098
              NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                       ++adedv +i+  +Pvl+s+a elf+ +l  r++  + ++  +tl+   ++++v+r   fdfl+++v +
  GRMZM2G105317_P01  1 MQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVSK 69
                       899**************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.3E-18171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.1E-18168IPR009072Histone-fold
PfamPF008086.9E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRTYEITLQS GAKTLNSFHL KQCVKRYSSF  60
DFLTEVVSKV PDLGGADSCG DERVLPRRRK SNGSDPENDE SRSSKMAIRN ANTSPRGRGR  120
GRGRGRGRPP TKRKEVGYVQ FEDESSMFAE QGETLPGEGT VPEINSGNEI TPQSTQPPLT  180
APAQATNSKV EEASTDHQSD WPMPDATGNI GVGPSGFGHL TVQVDEDEDY DNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-151542174Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18589PRRRK
2117126RGRGRGRGRG
3117127RGRGRGRGRGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.966880.0ear| embryo| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105317
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105317_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0627540.0BT062754.1 Zea mays full-length cDNA clone ZM_BFb0342F17 mRNA, complete cds.
GenBankEU9646890.0EU964689.1 Zea mays clone 280866 repressor protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159016.11e-173repressor protein
RefseqXP_008668194.11e-173repressor protein isoform X1
RefseqXP_008668196.11e-173repressor protein isoform X1
RefseqXP_020403401.11e-173repressor protein isoform X1
RefseqXP_020403402.11e-173repressor protein isoform X1
TrEMBLA0A096RNP61e-172A0A096RNP6_MAIZE; Nuclear factor Y subunit C11
TrEMBLB6TI741e-172B6TI74_MAIZE; Nuclear factor Y subunit C11
TrEMBLK0DCL11e-172K0DCL1_MAIZE; CA5P8 CCAAT-HAP5 type transcription factor (Fragment)
STRINGGRMZM2G105317_P031e-173(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-40nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]