PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105387_P03
Common NameLOC100282492, MADS32, ZEAMMB73_698020, Zm.11627
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25473.2 Da    PI: 8.3096
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105387_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.5e-241056248
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                       r+en   rqvtf+kRr+g+lKKA ELSvLCda v +i+fs +gkly+
  GRMZM2G105387_P03 10 RVENPVHRQVTFCKRRAGLLKKARELSVLCDASVGIIVFSAHGKLYD 56
                       789******************************************97 PP
2K-box44.46.9e-16901741699
              K-box  16 slqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          ++e + L++ei+ Lq+ +R + G+  +  +++ eL+ Le+ Le  + + Rs K++++ ++i+ l+ ke +l+ +n+ L++k+ 
  GRMZM2G105387_P03  90 DPKHETTVLQQEINLLQKGLRYIYGNRANeHMNVDELNALERYLEIWMYNTRSAKMQIMAQEIQALKSKEGMLKAANEILQEKIV 174
                        55789999*****************998626****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-26177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.156161IPR002100Transcription factor, MADS-box
CDDcd002655.09E-37279No hitNo description
PRINTSPR004045.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221055IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.54188179IPR002487Transcription factor, K-box
PfamPF014861.5E-1991173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MARGKVQLRR VENPVHRQVT FCKRRAGLLK KARELSVLCD ASVGIIVFSA HGKLYDLATT  60
GTMEELIERY KAASAGEATT DGCGRHNRMD PKHETTVLQQ EINLLQKGLR YIYGNRANEH  120
MNVDELNALE RYLEIWMYNT RSAKMQIMAQ EIQALKSKEG MLKAANEILQ EKIVEQSSLL  180
DVGMVVADQQ NGRFSTVPLV EEVISSNPLT VLSGYSSCRG SEMGYSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15170169MEF2C
5f28_B3e-15170169MEF2C
5f28_C3e-15170169MEF2C
5f28_D3e-15170169MEF2C
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105387
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105387_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0850010.0BT085001.1 Zea mays full-length cDNA clone ZM_BFb0224I24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148873.21e-170MADS-box transcription factor 26
SwissprotA2YQK91e-140MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-140MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLC4J2F41e-168C4J2F4_MAIZE; Agamous-like MADS-box protein AGL12
STRINGGRMZM2G105387_P021e-162(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.14e-63AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  4. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]