PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G105641_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 236aa    MW: 27167 Da    PI: 8.3247
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G105641_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK857.1e-2770120252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        +ke+++e+ls++Fs pik+AA+eL+v++TvLKr+CR++G+ RWP+Rk+ksl
  GRMZM2G105641_P01  70 KKELTFEQLSRHFSVPIKQAAQELNVGVTVLKRQCRKLGVTRWPYRKLKSL 120
                        89***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.99653141IPR003035RWP-RK domain
PfamPF020422.1E-2373120IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEMNFFSQDE LGGLFDVDFP SFWAQMEEDE ARRKSEEGDC EKALIVYGNV QTVAEIPGRR  60
GGGSSSGTKK KELTFEQLSR HFSVPIKQAA QELNVGVTVL KRQCRKLGVT RWPYRKLKSL  120
DKLIDNVQGI GKQNAQENGH LTRSLVEFLD QTMKPIGERP DAMLDQRMEG LRLVCFKENV  180
QEDENLTRSV VEFLQLTKKM IEERPDAILD QRTKDLRQAC FKESFRRKRL IGHGAW
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G105641
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G105641_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1905710.0AC190571.5 Zea mays BAC clone CH201-151G9 from chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647199.21e-175protein RKD3
TrEMBLA0A1D6HKA61e-174A0A1D6HKA6_MAIZE; Protein RKD3
STRINGGRMZM2G105641_P011e-174(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Representative plantOGRP5671777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-27RWP-RK domain-containing protein