PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106673_P05
Common NameABI14, IDP386, ZEAMMB73_261802
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 144aa    MW: 16709.9 Da    PI: 5.2884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106673_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1546135198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +t+s+v+   +l lp +f++++  +k ++ ++tl de+  + +  +   k++    l++GW++F+ +++L +gD +vF+l+++++f  
  GRMZM2G106673_P05  46 FIKPMTQSHVTGGFWLGLPIHFCRKYL-PK-RDEMITLVDEDDDESDTLYLAMKRG----LSAGWRGFAVQQKLVDGDCLVFQLIEQTKF-- 129
                        89************************5.33.5569********9999999444444....9***********************987777.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v + r
  GRMZM2G106673_P05 130 KVYITR 135
                        777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-2038137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-2339137IPR015300DNA-binding pseudobarrel domain
CDDcd100178.79E-2444135No hitNo description
PfamPF023628.4E-1446136IPR003340B3 DNA binding domain
SMARTSM010194.1E-1746137IPR003340B3 DNA binding domain
PROSITE profilePS5086310.81446137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MKIRRTYGSV RRDLTNRVYA TDDARSYAIS KAEDLEQELD SSFPIFIKPM TQSHVTGGFW  60
LGLPIHFCRK YLPKRDEMIT LVDEDDDESD TLYLAMKRGL SAGWRGFAVQ QKLVDGDCLV  120
FQLIEQTKFK VYITRASSYY ESED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.729640.0aerial organ| cell culture| embryo| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106673
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106673_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0374440.0BT037444.1 Zea mays full-length cDNA clone ZM_BFb0169I10 mRNA, complete cds.
GenBankBT0647750.0BT064775.1 Zea mays full-length cDNA clone ZM_BFb0126B04 mRNA, complete cds.
GenBankBT0654760.0BT065476.2 Zea mays full-length cDNA clone ZM_BFb0176M17 mRNA, complete cds.
GenBankEU9595540.0EU959554.1 Zea mays clone 218541 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136712.11e-104uncharacterized LOC100216848
RefseqXP_008676667.11e-104uncharacterized protein LOC100216848 isoform X1
SwissprotQ69V364e-79Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLB4FK061e-103B4FK06_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G106673_P021e-104(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-57B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]