PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G106673_P06
Common NameABI14, IDP386, ZEAMMB73_261802
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 232aa    MW: 26661.4 Da    PI: 8.933
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G106673_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.5e-15134223198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +t+s+v+   +l lp +f++++  +k ++ ++tl de+  + +  +   k++    l++GW++F+ +++L +gD +vF+l+++++f  
  GRMZM2G106673_P06 134 FIKPMTQSHVTGGFWLGLPIHFCRKYL-PK-RDEMITLVDEDDDESDTLYLAMKRG----LSAGWRGFAVQQKLVDGDCLVFQLIEQTKF-- 217
                        89************************5.33.5569********9999999444444....9***********************987777.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v + r
  GRMZM2G106673_P06 218 KVYITR 223
                        777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-19126225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23127225IPR015300DNA-binding pseudobarrel domain
CDDcd100172.59E-23132223No hitNo description
PROSITE profilePS5086310.814134225IPR003340B3 DNA binding domain
PfamPF023622.8E-13134224IPR003340B3 DNA binding domain
SMARTSM010194.1E-17134225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAEATPYEEQ RRRQVEANKR KLEELQLHHL SAAIREAAAA AKPSLVKKRK ARVPLDVADA  60
VMEPVRRSGR LANLPDKPVY REKVPDFGMK IRRTYGSVRR DLTNRVYATD DARSYAISKA  120
EDLEQELDSS FPIFIKPMTQ SHVTGGFWLG LPIHFCRKYL PKRDEMITLV DEDDDESDTL  180
YLAMKRGLSA GWRGFAVQQK LVDGDCLVFQ LIEQTKFKVY ITRASSYYES ED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.729640.0aerial organ| cell culture| embryo| meristem| ovary| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G106673
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G106673_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0374440.0BT037444.1 Zea mays full-length cDNA clone ZM_BFb0169I10 mRNA, complete cds.
GenBankBT0654760.0BT065476.2 Zea mays full-length cDNA clone ZM_BFb0176M17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136712.11e-172uncharacterized LOC100216848
RefseqXP_008676667.11e-172uncharacterized protein LOC100216848 isoform X1
SwissprotQ69V361e-118Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLB4FK061e-171B4FK06_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G106673_P021e-172(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-66B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]