PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G107491_P02
Common NameLOC100283646, ZEAMMB73_594165
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 377aa    MW: 41461 Da    PI: 8.9261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G107491_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-102046127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C++G +C+F+H+p
  GRMZM2G107491_P02 20 PGEPDCTYYLRTGLCRFGMSCRFNHPP 46
                       5789*********************97 PP
2zf-CCCH38.32.2e-126791327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C+++++tGtCk+G++CkF+H++
  GRMZM2G107491_P02 67 QPECQYYLKTGTCKFGPTCKFHHPR 91
                       799********************96 PP
3zf-CCCH31.82.4e-10113137327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C ++++tG+Cky ++CkF+H++
  GRMZM2G107491_P02 113 EKECAYYLKTGQCKYANTCKFHHPE 137
                        679********************96 PP
4zf-CCCH39.97.2e-13264289227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++++tG Ck+G+ CkF+H++
  GRMZM2G107491_P02 264 DEPECQYYMKTGDCKFGAVCKFHHPR 289
                        789*********************96 PP
5zf-CCCH42.11.5e-13309334126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++elC+f++r+G+Ck+G++CkF H+
  GRMZM2G107491_P02 309 PGEELCKFYSRYGICKFGANCKFDHP 334
                        689**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-51946IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9711947IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-82146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-52447IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-42545IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.6946492IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-66491IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-106791IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-66893IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-57092IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235110138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6110137IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4112137IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7113137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4116136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695262290IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5262289IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9264289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5265289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4268288IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413308336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6309335IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-11310334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5312333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKMAMNSGAT MQPGSYPERP GEPDCTYYLR TGLCRFGMSC RFNHPPDRNL AIASARMKGE  60
YPERVGQPEC QYYLKTGTCK FGPTCKFHHP REKAGIAGRV QLNTLGYPLL PNEKECAYYL  120
KTGQCKYANT CKFHHPELFN VVPSSRGSPI YTSVHSSASA GPQSYTGTMS SWTFPRASFI  180
PSPRWQSPSN YAPMVVPHGL VQVPSWNSYP GQLQSPGAQQ TYGSSQQGEA SAGNQGMLSP  240
YRSSSFPVPQ YALQRDNVFP ERPDEPECQY YMKTGDCKFG AVCKFHHPRV RSQPPPDCVL  300
SPMGLPIRPG EELCKFYSRY GICKFGANCK FDHPTMAAPM GVYAYGFSGS ASVAPASTNA  360
PMTRHLLGSP SGSGYMS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.971610.0endosperm| glume| leaf| meristem| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G107491
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G107491_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670510.0BT067051.1 Zea mays full-length cDNA clone ZM_BFb0168E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150019.20.0zinc finger CCCH type domain-containing protein ZFN-like 2
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLB4FIU70.0B4FIU7_MAIZE; Zinc finger CCCH domain-containing protein 33
TrEMBLC0PFI20.0C0PFI2_MAIZE; Uncharacterized protein
TrEMBLK0DCM50.0K0DCM5_MAIZE; C3H49 C3H type transcription factor (Fragment)
STRINGGRMZM2G107491_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-147zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]