PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109480_P01
Common NameLOC100192994
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 146aa    MW: 16493.7 Da    PI: 6.0058
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109480_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1646136199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k++++s+v +  +l lp +f+++++ k  ++ t+tl de+ ++++ ++    ++++  l++GW +F+  + +++gD+ vF+l++ ++f  
  GRMZM2G109480_P01  46 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDATITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALYHAIQDGDSTVFQLIKPTTF-- 129
                        89************************844..788****************..555555..9***********************987777.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v+++r+
  GRMZM2G109480_P01 130 KVHIVRA 136
                        8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-1937136IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-2339136IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-2444135No hitNo description
SMARTSM010195.5E-1646137IPR003340B3 DNA binding domain
PfamPF023628.1E-1546136IPR003340B3 DNA binding domain
PROSITE profilePS5086311.4246137IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTRSPRRPAD LIYLARRGSI SMKARLEATR KAEELESQLD PEIPSFVKAM LHSHVVRGFW  60
LGLPSHFCDT YMPKQDATIT LVDEKDEEFD TNYLAYKKGL SGGWAGFALY HAIQDGDSTV  120
FQLIKPTTFK VHIVRAATDD SSEVDE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.183750.0cell lignification| ear| embryo| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109480
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109480_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0351340.0BT035134.1 Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds.
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345448.11e-106B3 domain-containing protein
SwissprotQ10QS91e-84Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A1D6JQU41e-105A0A1D6JQU4_MAIZE; B3 domain-containing protein
TrEMBLA0A317Y1P11e-105A0A317Y1P1_MAIZE; B3 domain-containing protein
STRINGSi037266m2e-93(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-44B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]