PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G109480_P03

Common Name

LOC100192994

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Protein Properties

Length: 230aa MW: 26142.1 Da PI: 9.9667

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G109480_P03	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48	2.3e-15	139	224	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k++++s+v + +l lp +f+++++ k ++ t+tl de+ ++++ ++ ++++ l++GW +F+ + +++gD+ vF+l++ ++f+ GRMZM2G109480_P03 139 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDATITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALYHAIQDGDSTVFQLIKPTTFKV 224 89**********************844..788************..555555..9*********************99777744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.7E-17	130	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-20	132	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.36E-21	137	225	No hit	No description
PROSITE profile	PS50863	10.405	139	230	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-13	139	225	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-13	139	230	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MEAAVAETQG MSPYEAARER NLQENKRKME ALNLRHLSAV IKEAPKTPSP MKPKRRRIIE 60 DAVVVPSPPR RSRRLANVPE VKYAEIAPHR ADRMTRSPRR PADLIYLARR GSISMKARLE 120 ATRKAEELES QLDPEIPSFV KAMLHSHVVR GFWLGLPSHF CDTYMPKQDA TITLVDEKDE 180 EFDTNYLAYK KGLSGGWAGF ALYHAIQDGD STVFQLIKPT TFKVLHAFSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	57	KRRRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.18375	0.0	cell lignification\| ear\| embryo\| meristem\| shoot\| tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G109480

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G109480_P03

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT087300	0.0	BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001345448.1	1e-166	B3 domain-containing protein
Swissprot	Q10QS9	1e-129	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	C4J903	1e-165	C4J903_MAIZE; B3 domain-containing protein
STRING	GRMZM2G028794_P01	1e-144	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-47	B3 family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G109480_P03

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]