PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109509_P02
Common NameZm.24436
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 902aa    MW: 100594 Da    PI: 5.5779
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109509_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.72.4e-28596646252
             RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        ek++sle+l+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  GRMZM2G109509_P02 596 EKTVSLEELRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 646
                        799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.995585666IPR003035RWP-RK domain
PfamPF020424.3E-26598646IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2402.7E-23814899No hitNo description
SuperFamilySSF542771.23E-21815899No hitNo description
PROSITE profilePS5174520.317817900IPR000270PB1 domain
SMARTSM006661.4E-22817900IPR000270PB1 domain
PfamPF005645.6E-16818899IPR000270PB1 domain
CDDcd064074.17E-38818898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MEQAPQTHGG GGLLACGVME DVAVGDLDLM EELFMAAPGF DFSDFSQPGA GGESPGVCFS  60
PLFDICSTTT TATPPPPPPS GDDNRDQPTP PRRGWVFQPR LEVDATVKER LRRALERIAS  120
LSQTQPGELL AQVWVPTVIG DRQVLTTCGQ PFWLDCRNER LANYRTVSMK YQFSADETAR  180
TDLGMPGRVF VGRVPEWTPD VRYFSTEEYP RVHHAQYFDI RGSVALPIFE PRSRVCLGVV  240
ELVMTTEKVN YNAEIQNICS ALKEVDLRSS DVSSDSRAKV TDTSYRAIIP EIVDVLRTVC  300
ETHKLPLAQT WIPCICQAKR GSRHTDEKLK YCVSTLDEAC YVRDLNVNGF HEACSEHHLF  360
RGEGVVGRAF ATNEPCFSED ITASSKIQYP LSHHAKLFSL RAAVAIRLRS ISTGSLDYVL  420
EFFLPVDCIE IEEQRAMLNS LSITIQQTCY TLRVVSLKEL VDEGSIETSA LTPPEYDKSM  480
HENIDEVCSG IGVPARTASL ETSEEVSSWI ASLVCAQNKG VKEMDGDLPF GFSKQEDEGF  540
SVTAGWHTSP VIEPEGSIFS GFKQHEEYKV KEVTCLRDPS SSNLEKTVEK RRTKMEKTVS  600
LEELRKHFAG SLKEAAKNLG VCPTTLKRIC RQHGINRWPS RKIKKVGHSL KKLQMVIDSV  660
HGSEGTVQLS SLYENFTKTT WSERELQGDA TYPLSEEKGP LEPSVPDRYC EGRFTSHTSG  720
SNSLSPSCSQ SSNSSHGCSS GSKSQQHVSA PQLAVKKEVF MEENQSSTLL KAASHAELQM  780
LPEERLVTLP RSHSQVLLSE QKPVENITGM QMSKPDSLKI KAMYGEERCI FRLQPSWGFE  840
KLKEEILKRF GIAREVYVDL KYLDDESEWV LLTCNADLLE CIDVYKSSST QTVRILVHSS  900
DQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109509
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109509_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337202.10.0uncharacterized protein LOC100278991
RefseqNP_001337203.10.0uncharacterized protein LOC100278991
RefseqXP_023157659.10.0uncharacterized protein LOC100278991 isoform X2
RefseqXP_023157660.10.0uncharacterized protein LOC100278991 isoform X2
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLA0A1D6JMR30.0A0A1D6JMR3_MAIZE; Protein NLP2
TrEMBLA0A317YCC00.0A0A317YCC0_MAIZE; Protein NLP1
STRINGGRMZM2G109509_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]