PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G109987_P05
Common NameHB133, rld1, ZEAMMB73_130618, Zm.94098
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92379.5 Da    PI: 6.2999
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G109987_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-183088357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  GRMZM2G109987_P05 30 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 88
                       5678****************************************************996 PP
2START158.45.4e-501683762205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++++  e+l d++  W +++++ e+  +   g  g++
  GRMZM2G109987_P05 168 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKGIEILKDRP-SWFRDCRSLEVFTRFPAGngGTI 258
                        688999****************************************************8888888888.***************99999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+   ++++vRae+lpSg+l++p+++g+s v++v+h dl+++++++
  GRMZM2G109987_P05 259 ELIYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPNaasTQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPE 350
                        *****************************************999999999999*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++k+++ +l+++++
  GRMZM2G109987_P05 351 VLRPLYESSRVVAQKMTTVALRHLRQ 376
                        *****************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2892589IPR001356Homeobox domain
SMARTSM003893.9E-152793IPR001356Homeobox domain
SuperFamilySSF466898.98E-162991IPR009057Homeodomain-like
CDDcd000861.27E-153090No hitNo description
PfamPF000466.3E-163188IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-173288IPR009057Homeodomain-like
CDDcd146863.78E-682121No hitNo description
PROSITE profilePS5084826.025158386IPR002913START domain
CDDcd088751.55E-73162378No hitNo description
Gene3DG3DSA:3.30.530.206.3E-21166351IPR023393START-like domain
SMARTSM002341.1E-37167377IPR002913START domain
SuperFamilySSF559611.92E-35168379No hitNo description
PfamPF018528.5E-48168376IPR002913START domain
PfamPF086709.3E-50699841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MGTMVAAVAL RGGSSDSGGF DKVPGMDSGK YVRYTPEQVE VLERLYIDCP KPSSSRRQQL  60
LRECPILSNI EPKQIKVWFQ NRRCRDKQRK ESSRLQAVNR KLTAMNKLLM EENERLQKQV  120
SQLVHENAHM RQQLQNTSLA NDTSCESNVT TPPNPIRDAS NPSGLLAIAE ETFTEFLSKA  180
TGTAIDWVQM PGMKPGPDSV GIVAISHGCR GVAARACGLV NLEPTKGIEI LKDRPSWFRD  240
CRSLEVFTRF PAGNGGTIEL IYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG  300
SGGGPNAAST QQFVRAEMLP SGYLVRPCEG GGSIVHIVDH LDLEAWSVPE VLRPLYESSR  360
VVAQKMTTVA LRHLRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS  420
VMGGDGIEDV VIACNSTKKI RNTSNAGITF GAPGGIICAK ASMLLQSVPP AVLVRFLREH  480
RSEWADYNID AYLASSLKTS ACSLPGLRPM RFSEGQMIMP LAHTVENEEI LEVVRLEGQP  540
LTHDEALLSR DIHLLQLCTG IDEKSVGSSF QLVFAPIDEH FPDDAPLISS GFRVIPLDVK  600
TDGVSSGRTL DLASSLDVGS AAPQASGESP DDCSLRSVLT IAFQFPYEMH LQDSVAAMAR  660
QYVRSVISAV QRVSMAISPS QSGLNAGHRM LSGFPEAATL ARWVCQSYHY HLGMELLNQS  720
DGAGEALLKM LWHHPDAVLC CSFKEKPMFT FANKAGLDML ETSLVALQDL TLDKIFDESG  780
RKALFSDISK LMEQGYAYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNIH CLAFCFVNWS  840
FV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.940980.0cell culture| ear| embryo| endosperm| meristem| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G109987
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Analysis of the maize HD-ZIPIII gene rolled leaf1 (rld1) suggests that altered expression patterns are responsible for keel outgrowth.
    [PMID: 20213690]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G109987_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0662870.0BT066287.1 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296150.10.0rolled leaf 1
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLC0PDB80.0C0PDB8_MAIZE; HB transcription factor
STRINGGRMZM2G109987_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Juarez MT,Kui JS,Thomas J,Heller BA,Timmermans MC
    microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity.
    Nature, 2004. 428(6978): p. 84-8
    [PMID:14999285]
  2. Johnston R,Candela H,Hake S,Foster T
    The maize milkweed pod1 mutant reveals a mechanism to modify organ morphology.
    Genesis, 2010. 48(7): p. 416-23
    [PMID:20213690]