PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110153_P01
Common Namem16, zmm16
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24062.6 Da    PI: 8.6762
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110153_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.7e-30959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtfskRrngilKKA E+SvLCdaev v++fss gkly+y+s
  GRMZM2G110153_P01  9 KRIENSTNRQVTFSKRRNGILKKAREISVLCDAEVGVVVFSSAGKLYDYCS 59
                       79***********************************************96 PP
2K-box74.13.8e-2571167197
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                        yq++sgk l+ +k++sl+ e++++kke++++q e+Rhl+GedL+sL+ k+L  +e++L+++l++  +k +e++ + + +++++e+e++    
  GRMZM2G110153_P01  71 YQTNSGKILWGEKHKSLSAEIDRIKKENDTMQIELRHLKGEDLNSLQPKDLIMIEEALDNGLTNLNEKLMEHWERRVTNTKMMEDENKLLAF 162
                        79999999************************************************************************************ PP

              K-box  93 aLrkk 97 
                        +L+++
  GRMZM2G110153_P01 163 KLHQQ 167
                        **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-43160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-34296IPR002100Transcription factor, MADS-box
CDDcd002651.05E-44280No hitNo description
PRINTSPR004041.2E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1383164IPR002487Transcription factor, K-box
PROSITE profilePS5129712.1584170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT FSKRRNGILK KAREISVLCD AEVGVVVFSS AGKLYDYCSP  60
KTSLSKILEK YQTNSGKILW GEKHKSLSAE IDRIKKENDT MQIELRHLKG EDLNSLQPKD  120
LIMIEEALDN GLTNLNEKLM EHWERRVTNT KMMEDENKLL AFKLHQQDIA LSGSMRELEL  180
GYHPDRDLAA QMPITFRVQP SHPNLQENN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-20186178MEF2 CHIMERA
6byy_B8e-20186178MEF2 CHIMERA
6byy_C8e-20186178MEF2 CHIMERA
6byy_D8e-20186178MEF2 CHIMERA
6bz1_A9e-20186178MEF2 CHIMERA
6bz1_B9e-20186178MEF2 CHIMERA
6bz1_C9e-20186178MEF2 CHIMERA
6bz1_D9e-20186178MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.3350.0ear| embryo| meristem| ovary| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110153
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in lodicules and stamens from early to late stage of flower development. {ECO:0000269|PubMed:10945340, ECO:0000269|Ref.1}.
UniprotTISSUE SPECIFICITY: Highly expressed in anthers and carpels. Expressed in pollen, tapetum and stigma. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Function -- GeneRIF ? help Back to Top
  1. sts1 mutants have novel phenotypes that provide insight into two derived aspects of maize flower development.
    [PMID: 26518212]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110153_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929590.0AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648490.0BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105136.11e-155MADS16
SwissprotQ407021e-143MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLQ9AR511e-153Q9AR51_MAIZE; Floral homeotic protein PISTILLATA
STRINGGRMZM2G110153_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Representative plantOGRP53021222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-74MIKC_MADS family protein
Publications ? help Back to Top
  1. Münster T, et al.
    Characterization of three GLOBOSA-like MADS-box genes from maize: evidence for ancient paralogy in one class of floral homeotic B-function genes of grasses.
    Gene, 2001. 262(1-2): p. 1-13
    [PMID:11179662]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Bartlett ME, et al.
    The Maize PI/GLO Ortholog Zmm16/sterile tassel silky ear1 Interacts with the Zygomorphy and Sex Determination Pathways in Flower Development.
    Plant Cell, 2015. 27(11): p. 3081-98
    [PMID:26518212]