PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110402_P01
Common NameLOC100191993
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 234aa    MW: 24335.8 Da    PI: 9.6717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110402_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-073257227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       kt+ C+ +     Ck G++C+FaHg+
  GRMZM2G110402_P01 32 KTRMCNKYNTAEGCKWGSKCHFAHGE 57
                       89**********************96 PP
2zf-CCCH375.6e-12200225127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC +f + G C +GdrC+FaHg+
  GRMZM2G110402_P01 200 FKTKLCENFNK-GSCTFGDRCHFAHGE 225
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-142662IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-83061IPR000571Zinc finger, CCCH-type
SMARTSM003561.43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5583058IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.64E-1599172IPR004088K Homology domain, type 1
SMARTSM003222.1E-10101171IPR004087K Homology domain
PROSITE profilePS5008415.137102166IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.108.2E-16102170IPR004088K Homology domain, type 1
PfamPF000132.5E-11104167IPR004088K Homology domain, type 1
CDDcd001051.27E-13104166No hitNo description
Gene3DG3DSA:4.10.1000.105.0E-17197231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-9199230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718199226IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7199225IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9200225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020142anatomystem internode
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTNLGGPPVP APPGRMPMGP GGPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL  60
GKPLQMDNPM GPPPMGPGPN GHFMPPPMPF PDMVPPSTFG ASATAKISVD ASLAGAIIGK  120
GGTNTKHISR VTGAKLAIRD NEADPNHKNI ELEGTFDQIK HASAMVTELI VRISGKPPPQ  180
AKNNPGRGPG SHAGGPGSNF KTKLCENFNK GSCTFGDRCH FAHGEGELRK PAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.677780.0cell lignification| embryo| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110402
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110402_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130889.11e-169zinc finger C-x8-C-x5-C-x3-H type family protein
RefseqXP_023155992.11e-169zinc finger C-x8-C-x5-C-x3-H type family protein isoform X1
SwissprotQ69XQ31e-130C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A1D6LR951e-168A0A1D6LR95_MAIZE; Zinc finger CCCH domain-containing protein 52
TrEMBLB4FAX81e-167B4FAX8_MAIZE; Zinc finger CCCH domain-containing protein 52
TrEMBLK4JRV11e-167K4JRV1_MAIZE; C3H-type transcription factor (Fragment)
STRINGGRMZM2G110402_P031e-168(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-52C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]