PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110541_P01
Common NameZm.143689
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 142aa    MW: 15378.8 Da    PI: 9.4526
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110541_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.21e-05446541
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                        C+ +  + ++ fC   +  lCe C    H+       H++ +
  GRMZM2G110541_P01  4 QCDVCAAEAASVFCCAVEAALCEACDRRVHRAnklagkHRRLS 46
                       7*****************************7688888888765 PP
2zf-B_box29.81.2e-0963104338
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                        ++ C+ ++ek+  lfC++++  lC+dC +  H        Ht
  GRMZM2G110541_P01  63 PPLCDICQEKRGLLFCKEDRAILCPDCDVPVHTAselamrHT 104
                        689**************************9995566666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.712147IPR000315B-box-type zinc finger
SMARTSM003361.7E-6147IPR000315B-box-type zinc finger
CDDcd000214.08E-4347No hitNo description
SMARTSM003369.9E-1261108IPR000315B-box-type zinc finger
PROSITE profilePS501199.17261108IPR000315B-box-type zinc finger
PfamPF006436.0E-862104IPR000315B-box-type zinc finger
CDDcd000216.96E-764108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MKVQCDVCAA EAASVFCCAV EAALCEACDR RVHRANKLAG KHRRLSLLSP AAPSSSAQQT  60
PPPPLCDICQ EKRGLLFCKE DRAILCPDCD VPVHTASELA MRHTRFLLTG VRLSGSPQSP  120
PRARRRRRRT RTTAAAAASP ST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123130RRRRRRTR
2124129RRRRRT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110541
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110541_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283970.0KJ728397.1 Zea mays clone pUT6681 orphans transcription factor (Orphan134) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454563.12e-62B-box zinc finger protein 20
SwissprotQ0IGM72e-48BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A060D8954e-94A0A060D895_MAIZE; B-box zinc finger protein 20 (Fragment)
TrEMBLA0A3L6EQ604e-94A0A3L6EQ60_MAIZE; B-box zinc finger protein 21
STRINGGRMZM2G110541_P015e-96(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Representative plantOGRP29841130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-28DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]