PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110582_P03
Common NameMADS71, si603017c03(382), ZEAMMB73_814205
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 223aa    MW: 24935.8 Da    PI: 10.9051
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110582_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.41.2e-155195246
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                        ie+  + qvtfskR+ g+ KKA+EL  LC+  va++ifs+  k+
  GRMZM2G110582_P03 51 HIEDGGRLQVTFSKRKSGLQKKASELFLLCGSPVAIVIFSPGKKV 95
                       58999999********************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.41342102IPR002100Transcription factor, MADS-box
SMARTSM004328.3E-2042101IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-2243117IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-154464IPR002100Transcription factor, MADS-box
PfamPF003191.8E-175296IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-156479IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-1579100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLAPPLIGIE KKNIGLGTWS RGRKLEKQDS RRTTTAMGRP SRGRQRIEIR HIEDGGRLQV  60
TFSKRKSGLQ KKASELFLLC GSPVAIVIFS PGKKVFALGT PSVDHVLRRY APIPGEEEED  120
GLLPVLQDTD DVSAITDRVE VEGIVRRTEE TKARSVMEKA RMDAIGKTVR QTAAKAGRKF  180
WWEADSGKLG EAELPEFAKV LRRLRVNLQR HLDSLSASTR QLQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110582
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110582_P03
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417420.0BT041742.2 Zea mays full-length cDNA clone ZM_BFb0042I18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141627.21e-160uncharacterized protein LOC100273746
TrEMBLB4FXA41e-159B4FXA4_MAIZE; MADS transcription factor
STRINGGRMZM5G878490_P011e-105(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-27AGAMOUS-like 62