PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110582_P04
Common NameMADS71, si603017c03(382), ZEAMMB73_814205
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20930.1 Da    PI: 10.596
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110582_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.88.7e-161559246
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                        ie+  + qvtfskR+ g+ KKA+EL  LC+  va++ifs+  k+
  GRMZM2G110582_P04 15 HIEDGGRLQVTFSKRKSGLQKKASELFLLCGSPVAIVIFSPGKKV 59
                       58999999********************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-20665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.413666IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-22781IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-15828IPR002100Transcription factor, MADS-box
PfamPF003191.3E-171660IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-152843IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-154364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MGRPSRGRQR IEIRHIEDGG RLQVTFSKRK SGLQKKASEL FLLCGSPVAI VIFSPGKKVF  60
ALGTPSVDHV LRRYAPIPGE EEEDGLLPVL QDTDDVSAIT DRVEVEGIVR RTEETKARSV  120
MEKARMDAIG KTVRQTAAKA GRKFWWEADS GKLGEAELPE FAKVLRRLRV NLQRHLDSLS  180
ASTRQLQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110582
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110582_P04
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417420.0BT041742.2 Zea mays full-length cDNA clone ZM_BFb0042I18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141627.21e-133uncharacterized protein LOC100273746
RefseqXP_008658273.11e-133putative MADS-box transcription factor family protein isoform X1
TrEMBLB4FXA41e-131B4FXA4_MAIZE; MADS transcription factor
STRINGGRMZM5G878490_P011e-106(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-28AGAMOUS-like 62