PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111123_P02
Common NameLOC100273773
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 253aa    MW: 28846.8 Da    PI: 6.5219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111123_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.1e-16155245199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                        f + +t s+v+   +l lpk+f++eh  k  ++ t+tl de+  +s +++l       +  l++GWkeF+ +++L +gD +vF+l++r++f 
  GRMZM2G111123_P02 155 FTQPMTLSHVSGGFWLGLPKHFCREHLPK--SDETITLVDEEDdESDTFYL--A---MQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKF- 238
                        67788999******************533..55699999*65526666777..2...33349************************98888. PP

                        .EEEEE-S CS
                 B3  92 lvvkvfrk 99 
                         +v ++r+
  GRMZM2G111123_P02 239 -KVYIIRA 245
                        .9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-22148245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-19150246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-24153244No hitNo description
PROSITE profilePS5086311.434155246IPR003340B3 DNA binding domain
SMARTSM010191.0E-18155246IPR003340B3 DNA binding domain
PfamPF023621.1E-13155245IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAEAVAVAYE EQRRRQIEMN KRKLEELQLH HLSAAVREAA AAAKPSSAKK RKAPVPRDAA  60
TEPPRRSDRL ANLPEKPMYR EVRVNLPFPE GSKSNARVPL DAANSVVVEP LRWSDRLANL  120
PKKPMYHEDS DEERSYAISK AEELVQELGS SFPIFTQPMT LSHVSGGFWL GLPKHFCREH  180
LPKSDETITL VDEEDDESDT FYLAMQAGLS TGWKEFAIQH KLLDGDCLVF QLIERTKFKV  240
YIIRATLYFE SDH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.852280.0meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111123
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111123_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417820.0BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141649.10.0B3 domain-containing protein
RefseqXP_008672457.10.0B3 domain-containing protein isoform X1
RefseqXP_008672458.10.0B3 domain-containing protein isoform X1
SwissprotQ69V367e-82Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLB4FXE40.0B4FXE4_MAIZE; B3 domain-containing protein
TrEMBLK0D9P90.0K0D9P9_MAIZE; ABI48 ABI3VP1 type transcription factor (Fragment)
STRINGGRMZM2G111123_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-45B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]