PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111354_P01
Common NameLOC103636675, WRKY22, ZEAMMB73_016401
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 227aa    MW: 25163.2 Da    PI: 8.3286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111354_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.55.8e-33148206159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+se+prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  GRMZM2G111354_P01 148 LDDGYRWRKYGQKAVKNSEHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 206
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33134206IPR003657WRKY domain
SuperFamilySSF1182901.83E-28142207IPR003657WRKY domain
PROSITE profilePS5081128.564143208IPR003657WRKY domain
SMARTSM007746.2E-39148207IPR003657WRKY domain
PfamPF031063.3E-26149206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENQQQLQGD DESPSHTFPS FPYFTVPSPQ PSLLPPPSES DDQRNTLATA LQQQPSSACN  60
NNDLQLLPLQ LGAATVDWSA LLQQHASLMG PLLPGLLLQQ PPAPLDDQSA ENAGSSSSKE  120
KGGAAAGRKK KASRPRFAFQ TRSVNDILDD GYRWRKYGQK AVKNSEHPRS YYRCTHHTCN  180
VKKQVQRLAK DTSIVVTTYE GVHNHPCEKL MEALSPILKQ LQFLSQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24138205774Probable WRKY transcription factor 4
2lex_A2e-24138205774Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111354
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111354_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282440.0KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657250.11e-168probable WRKY transcription factor 75
TrEMBLA0A3L6DSY31e-167A0A3L6DSY3_MAIZE; Putative WRKY transcription factor 24
TrEMBLK7VQ781e-167K7VQ78_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G111354_P011e-168(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.12e-55WRKY DNA-binding protein 24