PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111731_P01
Common NameLOC100381481
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 298aa    MW: 32187.6 Da    PI: 8.2776
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111731_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-1756101147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  GRMZM2G111731_P01  56 RGHWRPAEDAKLKELVAQYGPQNWNLIAERLD-GRSGKSCRLRWFNQ 101
                        899*****************************.***********996 PP
2Myb_DNA-binding53.36.3e-17108152147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +++ eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ +
  GRMZM2G111731_P01 108 RRAFSGEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 152
                        568999****************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.51251102IPR017930Myb domain
SMARTSM007172.0E-1455104IPR001005SANT/Myb domain
SuperFamilySSF466898.24E-2856153IPR009057Homeodomain-like
PfamPF002492.4E-1656101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2657109IPR009057Homeodomain-like
CDDcd001671.04E-1359100No hitNo description
PROSITE profilePS5129426.213103157IPR017930Myb domain
SMARTSM007179.4E-15107155IPR001005SANT/Myb domain
PfamPF002498.6E-14108152IPR001005SANT/Myb domain
CDDcd001671.91E-11110153No hitNo description
Gene3DG3DSA:1.10.10.604.4E-20110156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAAFFAAAPP PAAGALASFH HEEQQRQDAA EELYHVDDDV GEGGCGAGQQ GKLCARGHWR  60
PAEDAKLKEL VAQYGPQNWN LIAERLDGRS GKSCRLRWFN QLDPRINRRA FSGEEEERLL  120
AAHRAYGNKW ALIARLFPGR TDNAVKNHWH VLMARKQREH TGALRRRKPS SSPDPAPPTS  180
HLAPVVVLHH HHHQHHAGSP PRTVAAAHAQ YTAADTRAHS GGESDETAST CTTDLSLGSA  240
AAPCFYQSGY DAAPRAAAFA PSARSAFSAP PASARHGESR SDDKASPPFF DFLGVGAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32541565107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.189210.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111731
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}.
UniprotTISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111731_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613680.0BT061368.1 Zea mays full-length cDNA clone ZM_BFb0140D17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001167788.10.0MYB transcription factor
SwissprotQ5NBM83e-96CSA_ORYSJ; Transcription factor CSA
TrEMBLC0HGB20.0C0HGB2_MAIZE; MYB transcription factor
STRINGGRMZM2G111731_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-65myb domain protein 117
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]