PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111906_P01
Common NameLOC100382581
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 422aa    MW: 45064.2 Da    PI: 6.4337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111906_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-10372420348
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        rW+  E+e l ++v+++G g+W+ I        +gRt+ ++k++w++ l
  GRMZM2G111906_P01 372 RWSLFEEETLRKGVEEYGVGNWRDILDNNAeafTGRTPVDLKDKWRNML 420
                        9****************************9****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.835365422IPR017930Myb domain
SuperFamilySSF466892.17E-15367421IPR009057Homeodomain-like
SMARTSM007172.5E-8369422IPR001005SANT/Myb domain
CDDcd116607.53E-20371420No hitNo description
Gene3DG3DSA:1.10.10.609.2E-14371420IPR009057Homeodomain-like
PfamPF002494.0E-8372420IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPRLTPAHAT LILDHVLGDP SIPTAVTIAL IAGIPSPSDP TPRLRRGVLL RRLATDPVSE  60
SSLETLHLLA SLPACASPIA AAHIAVAAFL AASAPDFDAV ARALFARPDG RARQAVHGGS  120
SPALASDDAI ATVDQFEAAV GMSSSQTILR VLWGNRAAVE ERVQELLAAE WAAIGPSRLE  180
ALAMRIVGDG AVDTWGAADE AMRANLRILA GEAKTREILD KLEKTTCNTN PISTPAVEKV  240
MDALKASCAD LHSIVEDPLP AAKAVADELL TARMEKLVSL NAQEVGGQPT TCGVAGPSIH  300
NDKDNGPGIG KPHSLMERNA TARTSQWEES LGLDGSEPPS PPRPHLPSPR RLPPSPLSPP  360
GNKNNNRRKA RRWSLFEEET LRKGVEEYGV GNWRDILDNN AEAFTGRTPV DLKDKWRNML  420
FR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.104110.0cell lignification| ear| endosperm| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111906
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111906_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7381160.0AY738116.1 Zea mays terminal acidic SANT 1 mRNA, complete cds.
GenBankBT0856490.0BT085649.1 Zea mays full-length cDNA clone ZM_BFc0043O03 mRNA, complete cds.
GenBankEU9679750.0EU967975.1 Zea mays clone 312186 terminal acidic SANT 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105597.10.0terminal acidic SANT 1
TrEMBLA0A3L6E7370.0A0A3L6E737_MAIZE; Single myb histone 5
TrEMBLQ5EUJ40.0Q5EUJ4_MAIZE; Terminal acidic SANT 1
STRINGGRMZM2G111906_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.22e-09TRF-like 3
Publications ? help Back to Top
  1. Marian CO,Bass HW
    The Terminal acidic SANT 1 (Tacs1) gene of maize is expressed in tissues containing meristems and encodes an acidic SANT domain similar to some chromatin-remodeling complex proteins.
    Biochim. Biophys. Acta, 2005. 1727(2): p. 81-6
    [PMID:15716051]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]