PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111964_P01
Common NameZEAMMB73_606811
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 458aa    MW: 51299.3 Da    PI: 9.7368
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111964_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.12.5e-071782022751
                        HHHHHHHHHHCTS-HHHHHHHHHHH CS
           Homeobox  27 aeereeLAkklgLterqVkvWFqNr 51 
                        +++++eLA++++L+ rqV vWF N 
  GRMZM2G111964_P01 178 QAQKQELARQVDLSARQVEVWFRNT 202
                        5799********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.64E-5177213IPR009057Homeodomain-like
CDDcd000860.00114178201No hitNo description
Gene3DG3DSA:1.10.10.601.3E-5178202IPR009057Homeodomain-like
PfamPF000467.6E-5178202IPR001356Homeobox domain
PROSITE profilePS500718.875180209IPR001356Homeobox domain
SuperFamilySSF889462.67E-10344399IPR013325RNA polymerase sigma factor, region 2
Gene3DG3DSA:1.10.601.101.4E-8368399No hitNo description
PfamPF045421.8E-4368404IPR007627RNA polymerase sigma-70 region 2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006352Biological ProcessDNA-templated transcription, initiation
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016987Molecular Functionsigma factor activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGRKRSSGAV DLGCVMWLVL ARREIPGAVA AGRSWGSVCN SGGRQWGRSF LLKIQGAMEQ  60
EAEEATTKGR EEGVVVGERR WSRELAGRGT GVLPGRRRGA LAMEELLRGV QNREGGARAH  120
GRRRAGERAC LGAGLRKKGL GAMERKGAEL PALAAAANFC FFLLLTDEQM NVSCIVGQAQ  180
KQELARQVDL SARQVEVWFR NTHIQITHIF MLMLTHTGSW AAQTPAHRRA PRGLPPALLW  240
HGDCSAKDDG VQDPMAEIVR LTSCNVNELE YLRAEDMKEQ PYEAKRELTK DPELYCTDSV  300
SPLLGLVTSK LITNQYRKML LAITLEPAIV VSVVVKVMTI AMLYRVHGQL QERHERMLVH  360
HRHRGRKQGG LIGLLHVIEK FDALRGFSIS TYVYWWIRQL RADYPPLLYY SPCILFGLWG  420
VWEYQCRLQH VCREPGVSQL DQEASNLLTS TQSGLIGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.993672e-57meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111964
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111964_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554311e-43EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G111964_P010.0(Zea mays)