PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113257_P02
Common NamebHLH169, LOC100274144
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 214aa    MW: 23005.9 Da    PI: 9.4998
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113257_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-131864354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r+h+e+Er+RR+riN  +++Lr+llP a      +++Ka+ L ++v+++++L
  GRMZM2G113257_P02 18 RSHSEAERKRRQRINAHLATLRTLLPAA-----SRMDKAALLGEVVRHVREL 64
                       68*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.1611564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-141867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-111864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-131870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-111865No hitNo description
SMARTSM003536.2E-122170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.1E-5111176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDRECSPLAA TTRSGTGRSH SEAERKRRQR INAHLATLRT LLPAASRMDK AALLGEVVRH  60
VRELRGEADA AAAGAAVAVP GEGDEVGVEE GHQHRFCHGG ERAARRVRAW VCCADRPGLM  120
SELGRAVRSV SARAVRAEIA TVGGRTRSVL ELDVGGRHHD GEGTSTSSRP ALQAALRAVL  180
LSREEMLGAE CYKRQRFSAH LARVYDSGAV EVTD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.335720.0ear| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113257
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113257_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279680.0KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346643.11e-148uncharacterized protein LOC100274144
TrEMBLA0A060D7Y31e-147A0A060D7Y3_MAIZE; BHLH transcription factor (Fragment)
STRINGGRMZM2G113257_P021e-148(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-17bHLH family protein