PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113779_P01
Common NameSBP13, Zm.20782
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 99aa    MW: 11294.6 Da    PI: 10.6472
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113779_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP117.85.6e-371681178
                       -TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP 11 lseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       ++e k y+rrhkvCe+hskapvvlv+gl+qrfCqqCsrfhelsefD+ krsCr rLa+hnerrrk++a
  GRMZM2G113779_P01  1 MTEEKPYNRRHKVCEAHSKAPVVLVAGLRQRFCQQCSRFHELSEFDDVKRSCRLRLAGHNERRRKSSA 68
                       57899************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114127.231166IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.106.5E-27253IPR004333Transcription factor, SBP-box
PfamPF031102.1E-28265IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.09E-32270IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MTEEKPYNRR HKVCEAHSKA PVVLVAGLRQ RFCQQCSRFH ELSEFDDVKR SCRLRLAGHN  60
ERRRKSSADA HAGGGNNGFR QHADQNGRGD PAGNHFQIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-291652084squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.207821e-169ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113779
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00359DAPTransfer from AT3G15270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113779_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654451e-167BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462902.16e-50squamosa promoter-binding-like protein 13
SwissprotQ6Z4612e-36SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A1D6EWJ82e-68A0A1D6EWJ8_MAIZE; Squamosa promoter-binding-like protein 5
STRINGGRMZM2G113779_P011e-67(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-34squamosa promoter binding protein-like 5