PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114613_P05
Common Namecl889_1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 112aa    MW: 11581.6 Da    PI: 8.6516
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114613_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD150.92.5e-161842125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg+C+t+L+YP+GApsV+Ca+C+++
  GRMZM2G114613_P05 18 CGQCQTVLMYPYGAPSVKCAVCNFI 42
                       ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-111544IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-141842IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MLTIFVHPAV SSIAHVNCGQ CQTVLMYPYG APSVKCAVCN FITNVGGVTP MIPLPPPALT  60
ASSGTSYIIP SISVPTNQPR NVTVVVENPM TVDDKGKLVS NVVVGVTSGG KK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41771e-175embryo| endosperm| meristem| ovary| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114613
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114613_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0696740.0BT069674.1 Zea mays full-length cDNA clone ZM_BFb0207B08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020405094.13e-67uncharacterized protein LOC100194364 isoform X2
SwissprotQ2QMB33e-45LOL2_ORYSJ; Protein LOL2
TrEMBLC0PN053e-73C0PN05_MAIZE; Uncharacterized protein
STRINGGRMZM2G114613_P026e-65(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.64e-18LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]