PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114680_P03
Common NameZEAMMB73_705287, Zm.21676
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 170aa    MW: 18488.3 Da    PI: 10.8903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114680_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS125.18.1e-39310283183
               GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAee 171
                        +f+++ P+l+f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++l +tg+rL+ fA++
  GRMZM2G114680_P03   3 AFNQIAPFLRFAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARS 90 
                        6****************************************************988888***********....9***************** PP

               GRAS 172 lgvpfefnvlva 183
                        +++pf+f++l+ 
  GRMZM2G114680_P03  91 IQLPFHFTPLLL 102
                        *********854 PP
2GRAS37.14.6e-12117170311363
               GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                         le+W ++ + aGF + pls +a++qa+lllr ++ s+gy v+e +g+ +lgW+
  GRMZM2G114680_P03 117 GLERWGAAARGAGFAARPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQ 170
                        6899*************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.6421170IPR005202Transcription factor GRAS
PfamPF035142.8E-363102IPR005202Transcription factor GRAS
PfamPF035141.6E-9117170IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
YLAFNQIAPF LRFAHLTANQ AILDAVEGAR RIHILDLDAA HGVQWPPLLQ AIAERADPAA  60
GPPEVRITGA GADRDTLLRT GSRLRAFARS IQLPFHFTPL LLSCAALGPS GGRWWRGLER  120
WGAAARGAGF AARPLSAFAV SQARLLLRLH YPSEGYLVQE ARGACFLGWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-24110099195Protein SCARECROW
5b3h_A7e-24110098194Protein SCARECROW
5b3h_D7e-24110098194Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114680
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114680_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8765581e-158KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437271.25e-65LOW QUALITY PROTEIN: protein MONOCULM 1
RefseqXP_004965904.25e-65protein MONOCULM 1
RefseqXP_008659845.15e-65protein MONOCULM 1
RefseqXP_012700859.15e-65protein MONOCULM 1
SwissprotQ84MM91e-62MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A141NWT74e-64A0A141NWT7_9POAL; Monoculm 1
TrEMBLA0A1W0VTV74e-64A0A1W0VTV7_SORBI; Uncharacterized protein
TrEMBLA0A3L6DCN24e-64A0A3L6DCN2_MAIZE; Protein MONOCULM 1
STRINGSb10g023950.15e-65(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.14e-28GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]