PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G116646_P01
Common Namegpm293
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 185aa    MW: 20855.5 Da    PI: 9.2599
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G116646_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY175.43.5e-54114831170
              YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekee.sastsvssekl..senedeevpr..vpp 114
                        ++++vtvrCGhC++llsvnl+  ++ l+ ++h  ++ + +   +  +l+++++ +   ++  + s+s+ ++   +  ++ne++ +++    +
  GRMZM2G116646_P01   1 MLNIVTVRCGHCANLLSVNLRALMHSLPEQDHQLQQENIKvhgINGTLHDDHQYCGHLDQLGSsSSSRFRRLPVMcsPQNEQHLLQEqtLNN 92 
                        579***************************98433332224575666666666665554443303333344444454444444333211344 PP

              YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                          rPPekrqrvPsaynrfikeei+rika+nPdi hreafs+aaknWah+P+ihfgl
  GRMZM2G116646_P01  93 NARPPEKRQRVPSAYNRFIKEEIRRIKANNPDINHREAFSTAAKNWAHYPNIHFGL 148
                        78****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-541148IPR006780YABBY protein
SuperFamilySSF470953.93E-893142IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.109.6E-595142IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MLNIVTVRCG HCANLLSVNL RALMHSLPEQ DHQLQQENIK VHGINGTLHD DHQYCGHLDQ  60
LGSSSSSRFR RLPVMCSPQN EQHLLQEQTL NNNARPPEKR QRVPSAYNRF IKEEIRRIKA  120
NNPDINHREA FSTAAKNWAH YPNIHFGLDD SGREGKKKLV DHEAAASVVA VAAAPTAAKK  180
IQGFY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.24420.0aerial organ| embryo| endosperm| meristem| ovary| pedicel| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G116646
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G116646_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0684090.0BT068409.1 Zea mays full-length cDNA clone ZM_BFb0157I12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353892.11e-119uncharacterized protein LOC100193531
SwissprotQ2QM172e-59YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A1D6MVD31e-117A0A1D6MVD3_MAIZE; Putative axial regulator YABBY 2
TrEMBLC0PJE01e-117C0PJE0_MAIZE; Putative axial regulator YABBY 2
STRINGGRMZM2G116646_P021e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.28e-43YABBY family protein