PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117164_P01
Common NameZm.18537
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26413.1 Da    PI: 4.7723
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117164_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-1849102456
                        -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  GRMZM2G117164_P01  49 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 102
                        458**************8899********************************9 PP
2HD-ZIP_I/II120.96.5e-3947140193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++da++++ e+L++e+ +L++++
  GRMZM2G117164_P01  47 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQFDAMHARVESLRQEKIALAAQV 138
                        69*****************9999******************************************************************999 PP

        HD-ZIP_I/II  92 ke 93 
                        +e
  GRMZM2G117164_P01 139 DE 140
                        76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.3E-1738106IPR009057Homeodomain-like
PROSITE profilePS5007117.29743104IPR001356Homeobox domain
SMARTSM003894.7E-1746108IPR001356Homeobox domain
CDDcd000861.18E-1548105No hitNo description
Gene3DG3DSA:1.10.10.608.2E-1949111IPR009057Homeodomain-like
PfamPF000461.3E-1549102IPR001356Homeobox domain
PRINTSPR000315.5E-77584IPR000047Helix-turn-helix motif
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PRINTSPR000315.5E-784100IPR000047Helix-turn-helix motif
PfamPF021833.8E-15104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MERGDCQFTV VPPRQYDEAQ FMHQLMVAGD QQDPAGAGRG AAAAGGERKR RFTEEQVRSL  60
ETTFHARRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY AALRAQFDAM  120
HARVESLRQE KIALAAQVDE LRGRLNERQD QSGSCEVNDA EAAADDKRNN STSSLVQDDG  180
ATPPPAAVDA SEDSAATGEY YDHVAYEYDG LHDPFVCATP DLWDTWPLLE WNAVA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.185370.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117164
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117164_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9723540.0EU972354.1 Zea mays clone 380106 homeobox-leucine zipper protein ATHB-6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.11e-172homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U15e-92HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1D6HER11e-172A0A1D6HER1_MAIZE; Homeobox-leucine zipper protein ATHB-6
STRINGGRMZM2G117164_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP1459844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.17e-34homeobox 12