PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G118063_P03
Common Nameumc1381, ZEAMMB73_701146
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 798aa    MW: 85633.3 Da    PI: 5.4285
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G118063_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20104160157
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        +++ +++t++q+ee+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  GRMZM2G118063_P03 104 KKRYHRHTQHQIEEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 160
                        688999************************************************995 PP
2START186.41.5e-583035231206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakae 80 
                        ela +a++el+++a +++p+W   +    ++++++e+ ++f+ + +      + ea+r+ +vv+m+   lve+l+d ++    ++  + +a+
  GRMZM2G118063_P03 303 ELAVAAMDELLRMARVDAPLWNGGVagvpQQLDEEEYGRTFPGGLGprqygLRPEASRDDAVVIMTRDSLVEILMDANRfaaVFSSIVSRAS 394
                        57899****************99999999************6665599999999************************88888888888*** PP

                        EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
              START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                        t+ev+s+g      galq+m++e+q++splvp R+++f+Ry++  ++g+w++vdvS+ds ++ p      +++++pSg+l+++++ng+skvt
  GRMZM2G118063_P03 395 THEVLSTGvagsynGALQVMSMEFQVPSPLVPtRESYFARYCKNNPDGTWAVVDVSLDSLRPSPA----LKCRRRPSGCLVQEMPNGYSKVT 482
                        **************************************************************995....9999******************* PP

                        EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        wvehv++++r++h+l+r+lv+sgl +ga +wv tl+rqce+
  GRMZM2G118063_P03 483 WVEHVEVDDRSVHNLYRPLVNSGLGFGATRWVGTLDRQCER 523
                        ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-2483145IPR009057Homeodomain-like
SuperFamilySSF466891.13E-1988161IPR009057Homeodomain-like
PROSITE profilePS5007117.022101161IPR001356Homeobox domain
SMARTSM003899.7E-20102165IPR001356Homeobox domain
PfamPF000463.6E-18104159IPR001356Homeobox domain
CDDcd000861.83E-19104162No hitNo description
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.606.1E-4146188IPR009057Homeodomain-like
CDDcd146860.00843157181No hitNo description
PROSITE profilePS5084837.615294526IPR002913START domain
SuperFamilySSF559613.24E-30296525No hitNo description
CDDcd088751.07E-115298522No hitNo description
SMARTSM002341.9E-50303523IPR002913START domain
PfamPF018528.6E-49304523IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-4397518IPR023393START-like domain
SuperFamilySSF559615.33E-24545787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MTPARRMPAM IGRNNGVAFG SSSALSLSQA DFLDSHHLQQ AFEQQLFEQI PAAAVDSSDN  60
IIHGRSDALV DEFESKSCSE NPDGTASGDD GQGDEDPNQR PNKKKRYHRH TQHQIEEMEA  120
FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERQENAQL RAENDKLRAE  180
NMRYKDALGT ASCPSCGGPA ALGEMSFDEH HLRLENARLR DEIDRISGIA AKHVGKPMVS  240
FPVLSSPLAA RSPFDLAGAY GVQPPGGGGG LGAADHLFGG AAGDLLRSVS AGQLSADKSM  300
IVELAVAAMD ELLRMARVDA PLWNGGVAGV PQQLDEEEYG RTFPGGLGPR QYGLRPEASR  360
DDAVVIMTRD SLVEILMDAN RFAAVFSSIV SRASTHEVLS TGVAGSYNGA LQVMSMEFQV  420
PSPLVPTRES YFARYCKNNP DGTWAVVDVS LDSLRPSPAL KCRRRPSGCL VQEMPNGYSK  480
VTWVEHVEVD DRSVHNLYRP LVNSGLGFGA TRWVGTLDRQ CERLASAMAS NIPNGDLGVI  540
TSIEGRKSML KLAERMVASF CGGVTASAAH QWTTLSGSGA EDVRVMTRKS VDDPGRPPGI  600
VLNAATSFWL PVPPKRVFDF LRDETSRSEW DILSNGGAVQ EMAHIANGRD HGNCVSLLRV  660
NSANSNQSNM LILQESCTDA SGSYVVYAPV DVVAMNVVLN GGDPDYVALL PSGFAILPDG  720
PPAPGMAPHH GGEGAAGGGL EELEAAGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIA  780
CTVERIKAAV CGAEGNPQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.286440.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G118063
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed in the L1-layer of the meristem and protoderm (epidermis) of leaf primordia. During leaf development, expressed in protoderm from plastochron 1 (P1) to P4 and down-regulated at P5 to then disappear. Expressed in the epidermis of primary rachis branch, and in the protoderm of secondary rachis branch primordia. Expressed similarly in L1-layer or protoderm in young and developed floral shoots. During embryogenesis, expressed in the outermost (epidermal) cells 2 days after pollination (DAP) and later at 4 DAP in protodermal cells without any organ differentiation. In nearly mature embryo, strongly expressed in protoderm in the shoot apical meristem (SAM) and lateral organ primordia. {ECO:0000269|PubMed:11846882}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G118063_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539170.0BT053917.1 Zea mays full-length cDNA clone ZM_BFc0045E07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008661805.10.0uncharacterized protein LOC100279257 isoform X1
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLB7ZX750.0B7ZX75_MAIZE; Homeodomain leucine zipper family IV protein
STRINGGRMZM2G118063_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Javelle M, et al.
    Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis.
    Plant Physiol., 2011. 157(2): p. 790-803
    [PMID:21825105]
  3. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  4. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  5. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]