PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G118214_P01
Common NameLOC100273197, ZEAMMB73_565548
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 461aa    MW: 49365.2 Da    PI: 9.7281
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G118214_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.12.7e-14144175132
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                        C +Cg+  Tp+WR+gp g+ tLCnaCG++ + 
  GRMZM2G118214_P01 144 CLQCGAVVTPQWRSGPMGQGTLCNACGVRLKV 175
                        899*************************9885 PP
2GATA52.47.4e-17278312135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  GRMZM2G118214_P01 278 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 312
                        99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-12138195IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.941138194IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.42E-12139189No hitNo description
Gene3DG3DSA:3.30.50.109.5E-13142180IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.4E-12144175IPR000679Zinc finger, GATA-type
PROSITE patternPS003440144169IPR000679Zinc finger, GATA-type
CDDcd002021.16E-10144188No hitNo description
SMARTSM004015.3E-14272326IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44272308IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-13273331No hitNo description
Gene3DG3DSA:3.30.50.109.6E-14276310IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.43E-14277333No hitNo description
PfamPF003201.3E-14278312IPR000679Zinc finger, GATA-type
PROSITE patternPS003440278303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAMADDEDKG EPPGLDPRTR RPVATGDMAG GGGEEEWEGP PGYVLSLPAV APLLPVAVSC  60
LDATVRRKRR SRPRLRAQPS GWWAFKLPVP APEEAKGPVL PASVVNNPSE EARPQSLCVR  120
QAPSPDPYTP AAAEERPVKS VRMCLQCGAV VTPQWRSGPM GQGTLCNACG VRLKVAGALR  180
GQVRHRPAPR TAARPPPDSP ASESSPDSPI WEPGSVPDVY LVRKMPLKQG RPPPPSPMPA  240
PPPPAPAVYL VKKKRKKTPA SVASAKKPWR PPKSAKQCLH CGSSSTPQWR EGPLGRSTLC  300
NACGVRYRQG RLLPEYRPLA SPTFEPSEHA NRHSQVLQLH RQRRSGSQSH HHQQQHPLPV  360
EKHPPRPTAA LQFPQRWHVK EEYPPTPPHQ PLPHPVVAGS LAAGELRVGG MVDAAADADA  420
DAGHGGGNGN GLSNAPSSLD SLLLEGPSAP LLVDDDDPLI D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1252256KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.865820.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G118214
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G118214_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337270.0BT033727.1 Zea mays full-length cDNA clone ZM_BFc0117H23 mRNA, complete cds.
GenBankBT0404240.0BT040424.1 Zea mays full-length cDNA clone ZM_BFc0090I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141113.10.0uncharacterized protein LOC100273197
TrEMBLB4F9D90.0B4F9D9_MAIZE; GATA transcription factor 14
STRINGGRMZM2G118214_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.16e-25GATA transcription factor 6