PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G118214_P02
Common NameLOC100273197, ZEAMMB73_565548
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 434aa    MW: 46485 Da    PI: 10.0665
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G118214_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.32.5e-14117148132
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                        C +Cg+  Tp+WR+gp g+ tLCnaCG++ + 
  GRMZM2G118214_P02 117 CLQCGAVVTPQWRSGPMGQGTLCNACGVRLKV 148
                        899*************************9885 PP
2GATA52.56.9e-17251285135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  GRMZM2G118214_P02 251 CLHCGSSSTPQWREGPLGRSTLCNACGVRYRQGRL 285
                        99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-12111168IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.941111167IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-12112162No hitNo description
Gene3DG3DSA:3.30.50.108.8E-13115153IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.56E-10117161No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003208.7E-12117148IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-14245299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44245281IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-13246304No hitNo description
Gene3DG3DSA:3.30.50.108.9E-14249283IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.85E-14250306No hitNo description
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
PfamPF003201.2E-14251285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAGGGGEEEW EGPPGYVLSL PAVAPLLPVA VSCLDATVRR KRRSRPRLRA QPSGWWAFKL  60
PVPAPEEAKG PVLPASVVNN PSEEARPQSL CVRQAPSPDP YTPAAAEERP VKSVRMCLQC  120
GAVVTPQWRS GPMGQGTLCN ACGVRLKVAG ALRGQVRHRP APRTAARPPP DSPASESSPD  180
SPIWEPGSVP DVYLVRKMPL KQGRPPPPSP MPAPPPPAPA VYLVKKKRKK TPASVASAKK  240
PWRPPKSAKQ CLHCGSSSTP QWREGPLGRS TLCNACGVRY RQGRLLPEYR PLASPTFEPS  300
EHANRHSQVL QLHRQRRSGS QSHHHQQQHP LPVEKHPPRP TAALQFPQRW HVKEEYPPTP  360
PHQPLPHPVV AGSLAAGELR VGGMVDAAAD ADADAGHGGG NGNGLSNAPS SLDSLLLEGP  420
SAPLLVDDDD PLID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.865820.0endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G118214
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G118214_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0337270.0BT033727.1 Zea mays full-length cDNA clone ZM_BFc0117H23 mRNA, complete cds.
GenBankBT0404240.0BT040424.1 Zea mays full-length cDNA clone ZM_BFc0090I01 mRNA, complete cds.
GenBankBT0687870.0BT068787.1 Zea mays full-length cDNA clone ZM_BFb0382C16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141113.10.0uncharacterized protein LOC100273197
RefseqXP_008661589.10.0putative GATA transcription factor family protein isoform X1
TrEMBLB4F9D90.0B4F9D9_MAIZE; GATA transcription factor 14
TrEMBLC0PKG80.0C0PKG8_MAIZE; Uncharacterized protein
STRINGGRMZM2G118214_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.16e-25GATA transcription factor 6