PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G118485_P02
Common NameLOC100191641
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 417aa    MW: 46816.2 Da    PI: 4.9093
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G118485_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34511432103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d++++ +isws+ g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we++++ F kg+k+l
  GRMZM2G118485_P02  51 FLTKVYDMVSDPATDAVISWSAAGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKGQKHL 133
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++ikrkk++
  GRMZM2G118485_P02 134 LKTIKRKKKS 143
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.3E-3447140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-5647140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3648140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-3151140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-185174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-18102114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGFTKRSPQH PASPAGGEVG AQTAGKVTPV PAAPESAPAA VVPRPPDVAP FLTKVYDMVS  60
DPATDAVISW SAAGGSFVIW DSHAFERDLL PRHFKHNHFT SFIRQLNTYG FHKVDPDRWE  120
WANEGFVKGQ KHLLKTIKRK KKSSQDVPSD LQSVPVKTAP GTENIEIGKY GGLEKEVETL  180
KRDKALLMQQ LVDLRQYQQS SSAEVQNLIQ RLRVMEQNQQ QMMALLAIVV QNPDFLNQLV  240
QQQRRSNWWN DDGNRKRRFQ ALEHGPVDDQ ETSGGGAQII QYRPPVPETS NQPIPANEAF  300
YSTPAQPASS PALEMPMDVE MASNNVNTFD STGNDFTDTS ALCEWDDMDI FGDELEHILQ  360
QPEQDFQVDP PLTVEDYGYD HPRLEQDCQM EAQQNCKNPQ YVACVLKQRE SHASDVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-25171401129Heat shock factor protein 1
5d5v_B7e-25171401129Heat shock factor protein 1
5d5v_D7e-25171401129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.274020.0meristem| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G118485
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G118485_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9609090.0EU960909.1 Zea mays clone 229513 heat shock factor protein HSF8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241714.10.0uncharacterized protein LOC100191641
RefseqXP_008669414.10.0uncharacterized LOC100191641 isoform X1
RefseqXP_020404917.10.0uncharacterized LOC100191641 isoform X1
SwissprotQ10PR40.0HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A1D6JU400.0A0A1D6JU40_MAIZE; ATP-dependent DNA helicase
STRINGGRMZM2G118485_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Representative plantOGRP1278345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.13e-70heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]