PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G119999_P01

Common Name

HB127, LOC100273913

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 32254.2 Da PI: 4.5669

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G119999_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	71	124	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k GRMZM2G119999_P01 71 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 124 4557899**********************************************9 PP
2	HD-ZIP_I/II	124.4	5.4e-40	70	162	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL+ ++dal+ e ++L++++++L++e+k GRMZM2G119999_P01 70 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRVRHDALRVECDALRRDKDALAAEIK 161 69***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 e GRMZM2G119999_P01 162 E 162 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.68E-18	66	128	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.471	66	126	IPR001356	Homeobox domain
SMART	SM00389	6.0E-19	69	130	IPR001356	Homeobox domain
CDD	cd00086	1.17E-16	71	127	No hit	No description
Pfam	PF00046	3.5E-16	71	124	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.0E-19	77	125	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	101	124	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.5E-13	126	167	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKRPTSRGSS MVSGQATTDL QEDSCRSMEP HGVDGDATAA AERDDVDAGA YDEEVDEEEE 60 LAGSRGGLGE KKRRLAADQV RALERSFEVD NKLDPERKAR IARDLSLHPR QVAVWFQNRR 120 ARWKTKQIER DFAALRVRHD ALRVECDALR RDKDALAAEI KELRGMVEKQ MEVKLESAAE 180 ELLPVATRSA AAAAVYNKDG STDSDSSAVF NEEASPYPYS GAALDHQQQQ ETSHPLGFTG 240 FTSFLTSSFP SVYHGDSHLD QEADGFFSAA AAGDGFFAEE QSAGIGSWYG GEGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	126	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.5776	0.0	root

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G119999

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G119999_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042027	0.0	BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141777.1	0.0	uncharacterized protein LOC100273913
Swissprot	Q338Z7	2e-94	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	B4FY39	0.0	B4FY39_MAIZE; HB transcription factor
STRING	GRMZM2G119999_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	2e-33	homeobox protein 16

Link Out ? help Back to Top
Phytozome	GRMZM2G119999_P01
Entrez Gene	100273913

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]