PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G121753_P01
Common NameMYBR89
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 87aa    MW: 10053.2 Da    PI: 8.4771
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G121753_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.2e-081660344
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       +W++ E +l+ +a +++  g   +W +++r mg  +t+ +++ ++
  GRMZM2G121753_P01 16 NWSKKENKLFEEALARYREGtpdRWLKVSRAMGGIKTADEVRRHY 60
                       8********************************778********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.2E-51366IPR001005SANT/Myb domain
CDDcd001673.50E-51660No hitNo description
SuperFamilySSF466896.16E-101668IPR009057Homeodomain-like
PfamPF002492.3E-61660IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSESRSSFRN VNTDCNWSKK ENKLFEEALA RYREGTPDRW LKVSRAMGGI KTADEVRRHY  60
EILNEDVTLI VSGGIPFPNY NTQGAWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-2217851178RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.250965e-76aerial organ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G121753
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G121753_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281961e-144KJ728196.1 Zea mays clone pUT6470 MYB-related transcription factor (MYBR89) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001358039.13e-60uncharacterized protein LOC103651394
SwissprotQ6NNN07e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A060D2G08e-59A0A060D2G0_MAIZE; MYB-related transcription factor (Fragment)
TrEMBLA0A3L6FGG88e-59A0A3L6FGG8_MAIZE; Protein RADIALIS-like 3
STRINGGRMZM2G121753_P011e-59(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-24RAD-like 1