PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G122537_P01
Common NameHB82, wox3A, Zm.19184
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 231aa    MW: 24470.7 Da    PI: 7.6162
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G122537_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.62.5e-142501457
                       HHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox 14 eLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       +Le++++   r+p+a+++++++++l    +++ ++V++WFqN++a++++
  GRMZM2G122537_P01  2 ILEDMYRGgLRTPNASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 50
                       8******99*************************************996 PP
2Wus_type_Homeobox90.91.2e-291511464
  Wus_type_Homeobox 14 kiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +iLe++y+ GlrtPn+++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  GRMZM2G122537_P01  1 MILEDMYRGGLRTPNASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 51
                       69************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.345151IPR001356Homeobox domain
SuperFamilySSF466892.02E-6251IPR009057Homeodomain-like
PfamPF000466.1E-12250IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MILEDMYRGG LRTPNASQIQ QITAHLACYG RIEGKNVFYW FQNHKARDRQ KMRRRLCMSH  60
HLLSCAQYYA AAAHHGHAAF LAAPPPYGHQ LLSPSTTSPT PAAAAAAAAA AYGYYYPATA  120
AFAAPASRCA GNATPPSPTT QLFHYQGGGG LVPTEALGRP EYSLGKLDNF GVALDDVVVS  180
STSGAVVDTM GAPPVAGFEV APPLPAAFSC RPLKTLDLFP GGLEEEQHDV A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.191840.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G122537
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G122537_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401840.0BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106239.11e-169uncharacterized protein LOC100127511
TrEMBLA8Y7V71e-168A8Y7V7_MAIZE; HB transcription factor
STRINGGRMZM2G122537_P021e-169(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-30WOX family protein
Publications ? help Back to Top
  1. Nardmann J,Zimmermann R,Durantini D,Kranz E,Werr W
    WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development.
    Mol. Biol. Evol., 2007. 24(11): p. 2474-84
    [PMID:17768306]