PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G122614_P01
Common NameLOC103646207
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 273aa    MW: 29733.7 Da    PI: 7.5841
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G122614_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.57.9e-2157158199
                        EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                        f kvlt sd+++ + +++  ++a++         g +  + + + ++d +g +W + +i+r++++r++lt+GW++Fv+ ++L+ gD+vvF+ 
  GRMZM2G122614_P01  57 FTKVLTASDANNGDVFSVLANCAKAVfpeldyslGTP--K-QFVCVRDVHGVEWMFCHIWRGSPKRHLLTAGWNNFVNTKKLRFGDSVVFM- 144
                        89*********************999****9965433..3.269***********************************************. PP

                        -SSSEE..EEEEE-S CS
                 B3  85 dgrsefelvvkvfrk 99 
                         ++++ + +v+++r+
  GRMZM2G122614_P01 145 -REEDSKIHVGLRRT 158
                        .4577888****997 PP
2Auxin_resp57.17.7e-20193267283
         Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ a  +  FevvY+P +++seF+v+v+ v++++          +mafete+ss+ ++   +Gt++ v+++dp  Wp+S+Wr+Lk
  GRMZM2G122614_P01 193 ARLAGAGLWFEVVYYPHVASSEFCVSVAAVKESM----------QMAFETEESSRVKVslfMGTIANVEATDPAWWPESPWRLLK 267
                        667778889*************************..........8**********998889**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-3149160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-2752159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-1756157No hitNo description
PfamPF023621.5E-1757158IPR003340B3 DNA binding domain
SMARTSM010192.1E-1657159IPR003340B3 DNA binding domain
PROSITE profilePS5086311.63257159IPR003340B3 DNA binding domain
PfamPF065071.0E-15192267IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MPPSLEPKAR GGAKPERYSS PRSPLGAVAD VGDALMSEGS RSARDGQQHQ QPRPVSFTKV  60
LTASDANNGD VFSVLANCAK AVFPELDYSL GTPKQFVCVR DVHGVEWMFC HIWRGSPKRH  120
LLTAGWNNFV NTKKLRFGDS VVFMREEDSK IHVGLRRTNR LFGAMQGNGG GPAGAVVGPS  180
DGKVSTEDVV AAARLAGAGL WFEVVYYPHV ASSEFCVSVA AVKESMQMAF ETEESSRVKV  240
SLFMGTIANV EATDPAWWPE SPWRLLKDPH IVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-3957267158367Auxin response factor 5
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G122614
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G122614_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404401.11e-140auxin response factor 10
SwissprotQ01I351e-73ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK61e-73ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A1D6E5Y11e-139A0A1D6E5Y1_MAIZE; Auxin response factor
STRINGGRMZM2G122614_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-57auxin response factor 16