PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G123140_P05
Common NameZm.163639
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 746aa    MW: 80347.9 Da    PI: 6.3576
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G123140_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.91.1e-1518571756
                       HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  GRMZM2G123140_P05 18 RLFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 57
                       79***********************************998 PP
2START122.26.6e-392254623206
                        HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.....................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
              START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv....................dsgealrasgvvdmvlallveellddkeqWde 74 
                        a +aa+ l k+  a+e +W + +    + ev+   e ++                      ++e +r+ +vv+m++ +lv  +ld + +W e
  GRMZM2G123140_P05 225 AAAAADTLAKMCRAGESLWLRRR--GASSEVMVADEHARMfswpvnggqqdssaspggaaARTEGSRDGTVVIMNSITLVDAFLDAN-KWME 313
                        56677777777777777777777..3333333333333334566666667777777777889999**********************.**** PP

                        T-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEE CS
              START  75 tla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSg 151
                         ++    ka t++ i+ g        g l lm+aelq++splvp R++vf Ry+     +g+w +vd   +  q     ++svvR+ ++pSg
  GRMZM2G123140_P05 314 LFPsivsKARTIQIINHGaasghmgsGSLLLMQAELQFPSPLVPaREVVFFRYCVHnGDEGTWSLVDFPAEGFQLEALqTPSVVRCCRRPSG 405
                        ********************************************************777899*****888877777779************* PP

                        EEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 152 iliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                        ++i++++ng+s v+wveh++  g     h++++  v sg a+ga +wv+ lqrqce+
  GRMZM2G123140_P05 406 CIIQDMPNGYSSVVWVEHTEIVGEEKplHQVFKDYVASGSAFGATRWVSLLQRQCER 462
                        ********************98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.0E-101063IPR001356Homeobox domain
PROSITE profilePS5007114.0741759IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-151863IPR009057Homeodomain-like
SuperFamilySSF466895.01E-131861IPR009057Homeodomain-like
PfamPF000463.4E-131857IPR001356Homeobox domain
CDDcd000868.32E-141860No hitNo description
PROSITE patternPS0002703457IPR017970Homeobox, conserved site
PROSITE profilePS5084843.079214465IPR002913START domain
SuperFamilySSF559619.75E-27217464No hitNo description
SMARTSM002342.5E-16223462IPR002913START domain
PfamPF018522.1E-31228462IPR002913START domain
CDDcd088751.10E-98234461No hitNo description
Gene3DG3DSA:3.30.530.204.2E-4352426IPR023393START-like domain
SuperFamilySSF559612.2E-15479724No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MHAWQWQWPA LHGRHTHRLF KECPHPDDKQ RLKLSQELGL KPRQVKFWFQ NRRTQMKAQQ  60
DRADNVLLRA ENESLKSDNY RLQAAIRNVV CPNCGHAAVL GEMSYEEQQL RIENARLKDE  120
LDRLACIATR YGGGRQPSMS SSALVCLSAP PPVLMPPLDL DMNVYSRHFT DQSPVMGCGD  180
LIQSVLGPPS QQITGGAEHH ASTPSFMGAM APVQEQDRQL VLDLAAAAAD TLAKMCRAGE  240
SLWLRRRGAS SEVMVADEHA RMFSWPVNGG QQDSSASPGG AAARTEGSRD GTVVIMNSIT  300
LVDAFLDANK WMELFPSIVS KARTIQIINH GAASGHMGSG SLLLMQAELQ FPSPLVPARE  360
VVFFRYCVHN GDEGTWSLVD FPAEGFQLEA LQTPSVVRCC RRPSGCIIQD MPNGYSSVVW  420
VEHTEIVGEE KPLHQVFKDY VASGSAFGAT RWVSLLQRQC ERLASELARN IADLGVIRTP  480
EARTNMMKLS QRMITSFSAN ISASGSQSWT SLSETTEDTI RVTTRKNTDP GQPSGVILTA  540
VSTSWLPFNH QKVFELLADE QQRCQLEIMS SGGSLHEVAH IANGSHPKNC ISLLRINAAS  600
NSSQNVELML QESSTHPDGG SLVVFATVDV DAIQVTMSGE DPSYIPLLPL GFAIFPAANP  660
SAAATSAAGS GDGQSSPAGN ADEPASGCLL TVGMQVLASA VPSAKLNLSS VTAINSHVCN  720
AVHQITAALK GAGASGAAEP AAAASE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.947490.0ear| meristem| pollen| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G123140
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G123140_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509860.0AJ250986.2 Zea mays mRNA for OCL4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337805.10.0OCL4 protein
RefseqXP_008648322.10.0OCL4 protein isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A096S0G00.0A0A096S0G0_MAIZE; Homeodomain leucine zipper family IV protein
STRINGGRMZM2G123140_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7