PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G123900_P01

Common Name

LOC100273972

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 314aa MW: 32229.9 Da PI: 9.0815

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G123900_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.2e-38	110	167	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s GRMZM2G123900_P01 110 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 167 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	92	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	111	165	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	111	165	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	113	149	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MVFSSLPIFL DPPNWGQMQM QMQQQSPLQC LLGSGGGSDH HHLMPPPSGL APLPGGPADT 60 AASGPAGGGS STSASVQAAA GAGAGAQPRP VVSMAERARL ARVPLPEPGT LRCPRCDSTN 120 TKFCYFNNYS LSQPRHFCKA CRRYWTRGGA LRNVPVGGGC RRNTKRSSKK SSRGGGAGAT 180 AATSSSSTTS TSTTATTTTT TSAALEASLE GYHHYLPLQM QPQFLQQAGL HGYHFADDGT 240 GVLAADGFPR GVVASGLLAQ LAAVKMEEHG SNGGGAIAAH HEQQSYWPGS TGGGGGWPVE 300 FLSGFSSSSS GNVL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.162573	0.0	tassel

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G123900

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G123900_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042127	0.0	BT042127.1 Zea mays full-length cDNA clone ZM_BFb0139D05 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141831.1	0.0	Dof zinc finger protein DOF2.2
TrEMBL	B4FYD9	0.0	B4FYD9_MAIZE; Uncharacterized protein
TrEMBL	K0DG85	0.0	K0DG85_MAIZE; DOF11 C2C2-DOF type transcription factor (Fragment)
STRING	GRMZM2G123900_P02	1e-157	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	2e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G123900_P01
Entrez Gene	100273972