PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G124421_P01
Common Namesi605027f07(712), ZEAMMB73_379667, Zm.81008
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 248aa    MW: 27689.2 Da    PI: 4.8996
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G124421_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC174.41.2e-54771811102
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql++fw ++   ie +tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+
  GRMZM2G124421_P01  77 QLQQFWVERmteIEATTDFKNHNLPLARIKKIMKADEDVRMISAEAPVVFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIY 168
                        89****988666899***************************************************************************** PP

              NF-YC  90 dflvdivprdelk 102
                        dflvdivprde+k
  GRMZM2G124421_P01 169 DFLVDIVPRDEMK 181
                        **********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.16E-3343171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-3792163IPR009072Histone-fold
PfamPF008085.6E-2199162IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEPSPQPMGV AAGGSQVYPA SAYPPAATVA PASVVSAGLQ SGQPFPANPG HMSAQHQIVY  60
QQAQQFHQQL QQQQQQQLQQ FWVERMTEIE ATTDFKNHNL PLARIKKIMK ADEDVRMISA  120
EAPVVFAKAC EIFILELTLR SWMHTEENKR RTLQKNDIAA AITRTDIYDF LVDIVPRDEM  180
KEDGIGLPRA GLPPMGAPAD AYPYYYMPQQ QVPGSGMVYG AQQGHPVTYL WQEPQQQQEQ  240
APEEQQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B9e-5888177695NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.810080.0endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G124421
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G124421_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379470.0BT037947.1 Zea mays full-length cDNA clone ZM_BFb0204G10 mRNA, complete cds.
GenBankEU9614260.0EU961426.1 Zea mays clone 235353 nuclear transcription factor Y subunit C-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136950.10.0uncharacterized LOC100217109
RefseqXP_020399097.10.0uncharacterized protein LOC100217109 isoform X1
SwissprotQ655V51e-124NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLB4FLF90.0B4FLF9_MAIZE; Nuclear transcription factor Y subunit C-2
TrEMBLK0DCP90.0K0DCP9_MAIZE; CA5P7 CCAAT-HAP5 type transcription factor (Fragment)
STRINGGRMZM2G124421_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.26e-64nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]