PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G124476_P01
Common NameLOC100191185, ZEAMMB73_426194
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 233aa    MW: 24179.2 Da    PI: 9.3278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G124476_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.9e-093358227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       kt+ C  +  t  C++Gd+C+FaH++
  GRMZM2G124476_P01 33 KTRMCTKYNTTEGCRFGDKCHFAHSE 58
                       9***********************95 PP
2zf-CCCH38.81.6e-12200225127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC +fa+ G C +G+rC+FaHg+
  GRMZM2G124476_P01 200 YKTKLCENFAK-GACTFGERCHFAHGE 225
                        9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0223158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8073159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-83262IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-53358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-133363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.105.1E-1499169IPR004088K Homology domain, type 1
SMARTSM003224.2E-1199169IPR004087K Homology domain
PROSITE profilePS5008414.131100164IPR004088K Homology domain, type 1
CDDcd001051.03E-13102164No hitNo description
PfamPF000134.3E-10102165IPR004088K Homology domain, type 1
SuperFamilySSF547915.11E-14102192IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.6E-15197229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-9198229IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-8199225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.122199226IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10200225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLNLGSPAVS APSRTHVDHA ALTGTSHSAS SGKTRMCTKY NTTEGCRFGD KCHFAHSERE  60
LGKPAYMPYG EPPMGGRFGG RPEPVQPAAM GPPAGNFGAS ATAKISVDAS LAGGIIGKGG  120
VNTKQISRVT GVKLCIRDHE SSPNLKNIEL EGNFDQIKQA GEMVRDLIAT ISTSMPAKNS  180
SAAVAPAGGR GGGLGSKSNY KTKLCENFAK GACTFGERCH FAHGENEQRS GAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1181070.0meristem| ovary| pollen| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G124476
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G124476_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332140.0BT033214.1 Zea mays full-length cDNA clone ZM_BFb0177L09 mRNA, complete cds.
GenBankBT0690450.0BT069045.1 Zea mays full-length cDNA clone ZM_BFb0145P03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130092.11e-171uncharacterized protein LOC100191185
SwissprotQ7XPK17e-99C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLK7TXD21e-171K7TXD2_MAIZE; Putative plastid-lipid-associated protein 13 chloroplastic
STRINGGRMZM2G124476_P021e-170(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-54C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]