PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G124566_P01
Common NameLOC100286247, ZEAMMB73_057957
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 229aa    MW: 24184.6 Da    PI: 10.7682
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G124566_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC811.1e-25143187145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  GRMZM2G124566_P01 143 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 187
                        69****************************************985 PP
2QLQ53.38.6e-1977113137
                QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  GRMZM2G124566_P01  77 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 113
                        799*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-677113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.4E-1178112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.22578113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.701143187IPR014977WRC domain
PfamPF088793.3E-21144186IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006995Biological Processcellular response to nitrogen starvation
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009624Biological Processresponse to nematode
GO:0009631Biological Processcold acclimation
GO:0016036Biological Processcellular response to phosphate starvation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0050826Biological Processresponse to freezing
GO:0051365Biological Processcellular response to potassium ion starvation
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005524Molecular FunctionATP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAEDKETDSP QPPAKLPRLS RADTSAGKHA RAGSREVTMA ASSPLVLGLG LGLGGRGGGG  60
ERDADVSPAT VTPKRPSALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVAASSF  120
GPQRFPSLMG LGSLCFDYRS SMEPEPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR  180
SRKPVEAAAA PAAAAGGSSP VLRVAAPQHV LGLSSPTSVL LAHGAARAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15359GGRGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.353640.0ear| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G124566
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G124566_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9763930.0EU976393.1 Zea mays clone 881905 growth-regulating factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334126.11e-132uncharacterized protein LOC100286247
SwissprotQ6EPP91e-95GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLB6UGM81e-163B6UGM8_MAIZE; Growth-regulating factor
STRINGGRMZM2G124566_P011e-164(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.15e-38growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]