PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125294_P01
Common NameLOC103635335, ZEAMMB73_914289, Zm.21811
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 1841aa    MW: 204825 Da    PI: 5.1258
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125294_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.6e-194498357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       kR   t++qle+Le+ +++++yp++++r+eL+ +l+Lt+rq ++WF+ rR k++k
  GRMZM2G125294_P01 44 KRVMKTPYQLEVLERTYAEDSYPNETKRAELSVQLNLTDRQLQMWFCHRRLKDRK 98
                       79999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-172498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-172998IPR009057Homeodomain-like
PROSITE profilePS5007116.3253999IPR001356Homeobox domain
SMARTSM003891.1E-1641103IPR001356Homeobox domain
CDDcd000862.08E-144499No hitNo description
PfamPF000461.1E-164498IPR001356Homeobox domain
SMARTSM005717.1E-18602661IPR018501DDT domain
PROSITE profilePS5082716.311602661IPR018501DDT domain
PfamPF027912.7E-15605658IPR018501DDT domain
PfamPF050661.1E-15784851IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.8E-89941036IPR028942WHIM1 domain
PfamPF156134.4E-1311731244IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1841 aa     Download sequence    Send to blast
MESSDDGGSG PAAGSPGPPS APAAVGGASS APGASGSGGK PPVKRVMKTP YQLEVLERTY  60
AEDSYPNETK RAELSVQLNL TDRQLQMWFC HRRLKDRKPP AKRQLRDEEV SVPVIGPPPP  120
VLPPPLPPSE MMVGTVGTYG EQLLPYSRRG SGRLSAAPRL SVPEIGRRYY EPPQVMLPHM  180
APVHLMQAEH RVIDSVEALI GEPLRDDGPV LGIEFDPLPP GAFGAPIVPE QPRQPFRSYE  240
TKMFSGPKTM KASAILPTTD PLLQNTGKRK SFIGSSHLGS QAVHEYQFLP EQPSDTYERA  300
SQSHFYDSSA EASNLRVAPL STGSRFLHGV EQAPSYTFHS QSSGSSHLTQ RGSGRSPIAS  360
ALTDHEGALS NINASTTPIH GQLGIPQVAG FESPLASPER LGYHDEDTYH MDRKRKHNEE  420
AKIAREVEAH EKRIRKELEK QDLLNRKREE QMRREMERHD RERRKEEERL MRERQREEEK  480
FQREQRREHK RMEKFMQKQS IRAEKLRQRE ELRREKEAAR QKAANERATA RRIARESMEL  540
MEDERLELLE LASRSKGLPS MVSLDSDTLQ QLDSFRGMLG KFPPETVRLK VPFSIKPWAA  600
SEDIIGNLLM AWKFFVTFGD VLGLPSFTLD EFVQALHDYD SRLLGELHVS LLKSVIKDIE  660
DVARTPSVAL GVNQSSSANP GGGHPQIVEG AYAWGINILN WQRHLNFLTW PEILRQFGLC  720
AGFGPQLKKS DAEIVHHRDD NEGRNGVDVI SILRNGSAAV KAAALMKERG YTNRRRSRHR  780
LTPGTVKFAA FHVLSLEGSK GLTILEVAEK IQKSGLRDLT TSKTPEASIS AALSRDTKLF  840
ERTAPSTYCV KTPYRKDPDD SEAVLAAARE KIRAFQNALP ECEEVEKDVD EAERDDDSEC  900
DDADDDADGD DVNIEDKDAK SPLVGAQYGA QITVVGDIKK ESNIVMNTSV PPSIQIKSSA  960
SVPFHTLDSK ASSSTDPEVG DDAKDIEIDE SNQGESWVQG LAEGDYCDLS VDERLNALVA  1020
LIAVANEGNS IRAILEERLE AASALKKQLW AEAQLDKRRI RDDFTSKMQY DSYVSMKVDT  1080
DQENNAAEIT LTPVHDPIKN NNGNANLMNN GLLVDKQNQL TTGDVYHQRN GASRESSTNA  1140
ESLSVQQYAS SEKTRSQLKS FIGHKAEQLY VYRSLPLGQD RRRNRYWQFS ASSSSYDPGS  1200
GRIFFESRDG YWRVIDTSEA FEALVASLDT RGIRESHLHS ILQSIEPTFK EAVERKRCAN  1260
LEHPTGRTSE NGSNESPNCN NEFGSPCSTL SGVASDNLMA HSDIFKIEVG RNEAEKNSIS  1320
KRASVFLKWI WRECYSHQST YAMRYGKKRC PELIHSCDYC YQIYLAEERH CSCHKTFKHI  1380
HNFLEHSSQC EEKQRTDPNW KMQTVDLSVP VGLRLLRLLL ATIEALVPAE ALLPFWTDGY  1440
RKSWGAKLYS ASSAEEVLQM LSVLESAIKR DYLSSNFETT TELLNSSTQD FATQNSAGGS  1500
GSATALPWVP DTTAAVALRL LDLDASISYT LHPKLGSNKE QESGDFMKLP PRYPSMNKGK  1560
QEIEQFRPIG FDQQDGTLLP NSNGRRGRGR GGRGGSRGGR SRGHGGRVPR GIGSSSRIQF  1620
RDDNSMLYGR APRKNARGGR GRGRGRGRGL RTVRPRQPSE LSARSIPKAN LLGSFSMLSK  1680
TNHTGTTHSP ESSGAEEWAF ERREYVKDDE NNLVSQSDES EENVEPMNEE YGEHISGYPR  1740
DNSDSRPVQM MGDGSDDNDE DAEGDEGEED GEDYEAEDPG DEDDDVEMDG DDDVEVDEDD  1800
DIEMDGDDDI EDDDDDDGGD GAANGDEDGG GTSSYSSEYS E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116391648RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.218110.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125294
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125294_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656037.10.0homeobox-DDT domain protein RLT2 isoform X1
TrEMBLA0A3L6DU460.0A0A3L6DU46_MAIZE; Homeobox-DDT domain protein RLT2
TrEMBLK7VT540.0K7VT54_MAIZE; Putative homeodomain-like transcription factor superfamily protein
STRINGGRMZM2G125294_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22833352
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator