PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125969_P02
Common Namecl30385_1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HSF
Protein Properties Length: 153aa    MW: 16434.6 Da    PI: 4.4944
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125969_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.36.2e-2552110260
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 
                        Fl+k+y++++d++++ ++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+Y
  GRMZM2G125969_P02  52 FLTKTYDMVDDSDTDLIVSWSATNNSFVVWDPHAFATVLLPRHFKHNNFSSFVRQLNTY 110
                        9********************999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-2746111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-2348111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-2848136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-145275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.0E-2152110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1490102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-14103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MDSTLNQVKE ESHGEGGDLM AGTVEAADGP SAAVAAAPKP MEGLHDPGPP PFLTKTYDMV  60
DDSDTDLIVS WSATNNSFVV WDPHAFATVL LPRHFKHNNF SSFVRQLNTY VSVCLPITVQ  120
HGMVHDAEVL TGLNVQLPNT TLLTILQVVG AIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1816110487Heat shock factor protein 1
5d5v_B2e-1816110487Heat shock factor protein 1
5d5v_D2e-1816110487Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.153250.0ear| embryo| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125969
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125969_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560060.0BT056006.1 Zea mays full-length cDNA clone ZM_BFc0120E04 mRNA, complete cds.
GenBankEU9567000.0EU956700.1 Zea mays clone 1571069 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4699680.0JX469968.1 Zea mays subsp. mays clone UT3231 HSF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146716.12e-75uncharacterized LOC100280318
SwissprotQ6VBB26e-46HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLB6SVD54e-74B6SVD5_MAIZE; Heat shock factor protein HSF30
TrEMBLK4JEA84e-74K4JEA8_MAIZE; HSF-type transcription factor (Fragment)
STRINGGRMZM2G125969_P017e-75(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.19e-37heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]