PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G125976_P01
Common NameLOC100272551, Zm.12357
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 576aa    MW: 61910.3 Da    PI: 8.3769
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G125976_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-103393761954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  GRMZM2G125976_P01 339 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 376
                        554458******************************88 PP
2BELL95.83.9e-31205274372
               BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +e q +k++L+sl++ V++rYkqy++qlq vissFe+vagl +a+p++ +Al+++S+hF+cLk ++++q+
  GRMZM2G125976_P01 205 AEQQWRKTRLISLMDDVCRRYKQYYQQLQSVISSFETVAGLSNAAPFAFMALRTMSKHFKCLKGMVMSQL 274
                        58899**************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-36135272IPR006563POX domain
PfamPF075268.7E-37140270IPR006563POX domain
PROSITE profilePS5007112.487317380IPR001356Homeobox domain
CDDcd000864.92E-14320381No hitNo description
SMARTSM003892.9E-11320384IPR001356Homeobox domain
SuperFamilySSF466893.59E-17322388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28323384IPR009057Homeodomain-like
PfamPF059205.1E-19337376IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MSSAAGGGYG AAGGAEHQHL LLGQASGQLY HVPQHSRREK LRFPPDPADS PPPTAWPAPP  60
PFYSYASSST SSYSPHSPTL AHTQLVAHAL PAGAGAQIPS QNFALSLSSA SSNPPPAPRR  120
QLAAGVAAGP YGPFTGYAAV LGRSRFLGPA QKLLEEICDV GGRPPHLDRR SDDEGMLDMD  180
AAGGVDHEMD GGDCATAEAV AVSGAEQQWR KTRLISLMDD VCRRYKQYYQ QLQSVISSFE  240
TVAGLSNAAP FAFMALRTMS KHFKCLKGMV MSQLRNTSKV IANHGIIAKD DMANFALMGG  300
GAGLLRGNSV NAFSQPHNIW RPQRGLPERA VSVLRSWLFE HFLHPYPTDS DKQMLAKQTG  360
LTRNQVSNWF INARVRLWKP MVEEIHNLEM RQLHKTTSVD QNQLGMQQQN HHSSDGSGRP  420
SSDPSNSQRG QSSGMTRNLS SRAPRHIQDD ELSQMPHDMA GQVSFAYSGL PPAHHGLALS  480
HHHHPQQAQA EAVGVGGVAA SSGGGVSLTL GLHQNNNNNR AYIAEPLPAA LPLSLPHRFG  540
LEDVSDAYVM GPFGGQDRHF SKGIGGGHNL LHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16326383158Homeobox protein Meis1
4xrs_B1e-16326383158Homeobox protein Meis1
5bng_A1e-16326384159Homeobox protein Meis2
5bng_B1e-16326384159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.123570.0ear| embryo| endosperm| glume| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G125976
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G125976_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0875270.0BT087527.1 Zea mays full-length cDNA clone ZM_BFb0102E07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647499.10.0uncharacterized protein LOC100272551 isoform X1
TrEMBLA0A3L6EA330.0A0A3L6EA33_MAIZE; BEL1-like homeodomain protein 9
TrEMBLC4J9N00.0C4J9N0_MAIZE; BEL1-like homeodomain protein 9
STRINGGRMZM2G125976_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-72TALE family protein