PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126148_P02
Common NameLOC100383956, THX38, ZEAMMB73_122216
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 436aa    MW: 49782.6 Da    PI: 6.9668
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126148_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.35.5e-25119215186
           trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                        +Wt+++v++Li+a+++++++ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk++ ++ + + +++++ + ++
  GRMZM2G126148_P02 119 KWTDSMVKLLITAVSYTGDDHGADSgggrrniaitQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLIDILGMGtACNVVANPAL 210
                        7*****************99999866677778888********************************************9955999999999 PP

           trihelix  82 fdqle 86 
                        +d+++
  GRMZM2G126148_P02 211 LDSMN 215
                        99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-20117241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGNDLPPGN MLQGAPYDSL DLHGDSMAKH APNSGKQIFS SSQMPGTFTM SMTRATEPDD  60
FPGFQFKEHG KSDDHHHHQY HSHHQKNCMS DGEEHDMAED ATDTPSGKGK KGSAWHRMKW  120
TDSMVKLLIT AVSYTGDDHG ADSGGGRRNI AITQKKGKWK AISKVMGERG CHVSPQQCED  180
KFNDLNKRYK RLIDILGMGT ACNVVANPAL LDSMNHLSDK MKDNAKKILS SKHLFYEEMC  240
SYHNNNRANL PEDHALQHSL LLALRCKEEH DLRRASGDAD EDDRSADSDY GENDEEQYPV  300
HTRMREPSTT KRKRHRDVAL VTSNSHEGSE RSDPHDVTVD INKAFTDATN MVLLQQDLAS  360
QAIEIQKRRL QIEAKELELT KQRHKWERFR KKKDREIERM ALENEHMVIE NKRLELELRH  420
KELELELKLK GKGNHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1380391KQRHKWERFRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.230170.0ear| meristem| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126148
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126148_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687190.0BT068719.1 Zea mays full-length cDNA clone ZM_BFb0370B05 mRNA, complete cds.
GenBankKJ7279480.0KJ727948.1 Zea mays clone pUT6046 trihelix transcription factor (THX38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353781.10.0uncharacterized protein LOC100383956
RefseqXP_008677660.10.0hypothetical protein
TrEMBLA0A3L6F5B70.0A0A3L6F5B7_MAIZE; Uncharacterized protein
TrEMBLC0PKA00.0C0PKA0_MAIZE; Trihelix transcription factor
STRINGGRMZM2G126148_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-85sequence-specific DNA binding transcription factors