PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126194_P01
Common NameIDP832, ZEAMMB73_242659
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 159aa    MW: 17317 Da    PI: 8.7766
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126194_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.7e-1546136498
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..E CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelv 93 
                        +l +s+v++  ++v+pk+ a    g  + + t+t    +grsWe+++  +++++   l++GW++F+ +ngLk gD +vF+l+ gr ++  ++
  GRMZM2G126194_P01  46 ILCKSHVNQPFQVVVPKSLAPFLPGT-TVPATVT---WHGRSWEMRF--TGGRQIQRLEAGWRGFALDNGLKLGDGCVFELVdGRaERVVFR 131
                        67889999999999999999766544.2343444...79********..9999999************************885666666666 PP

                        EEEE- CS
                 B3  94 vkvfr 98 
                        v+v+r
  GRMZM2G126194_P01 132 VQVLR 136
                        66666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-1840137IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-1640138IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-1541136No hitNo description
SMARTSM010197.7E-443138IPR003340B3 DNA binding domain
PROSITE profilePS5086312.39343138IPR003340B3 DNA binding domain
PfamPF023621.5E-1244135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSRCKPVGGE SPAADGPDPR RPMSETPCSV QPGVVPLLGK PYFTCILCKS HVNQPFQVVV  60
PKSLAPFLPG TTVPATVTWH GRSWEMRFTG GRQIQRLEAG WRGFALDNGL KLGDGCVFEL  120
VDGRAERVVF RVQVLRADIP AEIRERAGGY TSSSPILID
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126194
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126194_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9541640.0EU954164.1 Zea mays clone 1457632 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142732.11e-114uncharacterized protein LOC100275071
RefseqXP_020400549.11e-114uncharacterized protein LOC100275071 isoform X1
SwissprotQ7XLP44e-66Y4869_ORYSJ; B3 domain-containing protein Os04g0386900
TrEMBLB6SN491e-112B6SN49_MAIZE; B3 domain-containing protein
STRINGGRMZM2G126194_P011e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89543545
Representative plantOGRP7665916
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]