PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126197_P01
Common NameLOC103626282
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 246aa    MW: 26809.7 Da    PI: 8.2643
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126197_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06110129525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C+ +   G+C+ G++C++ H
  GRMZM2G126197_P01 110 ECNMYKM-GFCPNGPNCRYKH 129
                        6776666.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9575178IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-55177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-55278IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-65276IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59679104IPR000571Zinc finger, CCCH-type
SMARTSM003560.0179105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831105132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4111129IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDDGDGGLSF DFEGGLDSAP AAGGPVPSST DPGAGGGDGP GMHGRGRGRG SYRQTVCRHW  60
LRGLCMKGEA CGFLHQFDKA RMPVCRFFRD FGECREPDCA YKHSYDDVKE CNMYKMGFCP  120
NGPNCRYKHI KLPGPPPSVE EVLQKILQMR SFNRYSQNRN SNYNQQGERP QHPQGSALPN  180
QNSAENATAA APPAGGQQAQ TLNQQPPQQQ QKPNTNDQAQ GVSNGHQATR IATPLPQGPS  240
RCVWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C5e-21813112145Cleavage and polyadenylation specificity factor subunit 4
6fbs_C3e-211513132144Cleavage and polyadenylation specificity factor subunit 4
6fuw_C3e-211513132144Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.981880.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126197
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126197_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626790.0EU962679.1 Zea mays clone 244673 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393907.11e-174zinc finger CCCH domain-containing protein 45
SwissprotQ0DA501e-106C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A1D6GST90.0A0A1D6GST9_MAIZE; 30-kDa cleavage and polyadenylation specificity factor 30
STRINGGRMZM2G126197_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428
Representative plantOGRP499234