PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126808_P03
Common NameHB45, LOC100193486
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 292aa    MW: 30964 Da    PI: 8.7097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126808_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.9e-18121175256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  GRMZM2G126808_P03 121 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLKLRPRQVEVWFQNRRARTK 175
                        788899***********************************************98 PP
2HD-ZIP_I/II124.16.3e-40121210191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e +eLr +l
  GRMZM2G126808_P03 121 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLKLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCESLTEENRRLQRELQELR-AL 210
                        69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-17108171IPR009057Homeodomain-like
SuperFamilySSF466892.61E-18114178IPR009057Homeodomain-like
PROSITE profilePS5007117.006117177IPR001356Homeobox domain
SMARTSM003894.0E-15119181IPR001356Homeobox domain
PfamPF000464.1E-15121175IPR001356Homeobox domain
CDDcd000868.33E-15121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
SMARTSM003402.8E-23177220IPR003106Leucine zipper, homeobox-associated
PfamPF021838.0E-11177211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAQEDVHLDD AGLALGLSLG SGSGGASGAA RHGGISRRLS REVRLPSPHP LEPSLTLSLP  60
DEATATGSGG GGAAHSVSSL SVAGVKRERV DDAEGERASS TAALPRACAG AEDDDDDGST  120
RKKLRLTKEQ SALLEDRFKE HSTLNPKQKV ALAKQLKLRP RQVEVWFQNR RARTKLKQTE  180
VDCELLKRCC ESLTEENRRL QRELQELRAL KFAPHPQAPP SSATQAGAAA GVVPAPPPPL  240
YMQMQMPAAA TLSLCPSCDR LAGPGAAAKA EPRPKAAATH HFFNPFTHSA AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125TRKKLRL
2169177RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.193120.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126808
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126808_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0357540.0BT035754.2 Zea mays full-length cDNA clone ZM_BFb0081O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132073.20.0uncharacterized protein LOC100193486
SwissprotA2XE761e-102HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-102HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLB4FF660.0B4FF66_MAIZE; Homeobox-leucine zipper protein HAT3
STRINGGRMZM2G126808_P021e-164(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-33homeobox from Arabidopsis thaliana