PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G126957_P01
Common NameCA2P7, LOC100383789, ZEAMMB73_484051
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 145aa    MW: 16794.1 Da    PI: 8.7103
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G126957_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.71.4e-16843137
          CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37
                       +ep+YVNaKQy++Il+RRq+Rakle+++k+  k+rk 
  GRMZM2G126957_P01  8 EEPIYVNAKQYHAILRRRQTRAKLEAQNKM-VKNRKA 43
                       69****************************.999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-10666IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.268742IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.5E-14944IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601232IPR018362CCAAT-binding factor, conserved site
Gene3DG3DSA:3.40.50.6203.9E-3835134IPR014729Rossmann-like alpha/beta/alpha sandwich fold
PfamPF014063.8E-4540134IPR032678tRNA synthetases class I, catalytic domain
SuperFamilySSF523747.04E-3242132No hitNo description
PRINTSPR009838.9E-214866IPR024909Cysteinyl-tRNA synthetase/mycothiol ligase
PRINTSPR009838.9E-2179100IPR024909Cysteinyl-tRNA synthetase/mycothiol ligase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MLPVEPAEEP IYVNAKQYHA ILRRRQTRAK LEAQNKMVKN RKAAKEGEPF WDSPWGRGRP  60
GWHIECSAMS AHYLGHVFDI HGGGKDLIFP HHENELAQSQ AAYPESEVKC WMHNGFVNKD  120
DKKMAKSDNN FSRLEISLLF TIHWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1li5_A1e-3442131185274CYSTEINYL-TRNA SYNTHETASE
1li5_B1e-3442131185274CYSTEINYL-TRNA SYNTHETASE
1li7_A1e-3442131185274CYSTEINYL-TRNA SYNTHETASE
1li7_B1e-3442131185274CYSTEINYL-TRNA SYNTHETASE
1u0b_B1e-3442131185274cysteinyl tRNA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.981690.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G126957
Functional Description ? help Back to Top
Source Description
UniProtNuclear genome-encoded factor required for normal assembly of chloroplast polysomes. {ECO:0000269|PubMed:12271069}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G126957_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0682880.0BT068288.1 Zea mays full-length cDNA clone ZM_BFb0098N06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303550.11e-61cysteine--tRNA ligase, chloroplastic/mitochondrial-like
RefseqXP_025808720.11e-61cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial-like
SwissprotA0A1D6LAG92e-44CPS1_MAIZE; Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial
TrEMBLC0PJ191e-106C0PJ19_MAIZE; Uncharacterized protein
TrEMBLK7U6Q31e-105K7U6Q3_MAIZE; Nuclear transcription factor Y subunit A-8
STRINGGRMZM2G126957_P021e-106(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-15nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Barkan A
    Nuclear Mutants of Maize with Defects in Chloroplast Polysome Assembly Have Altered Chloroplast RNA Metabolism.
    Plant Cell, 1993. 5(4): p. 389-402
    [PMID:12271069]
  2. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  3. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  4. Belcher S,Williams-Carrier R,Stiffler N,Barkan A
    Large-scale genetic analysis of chloroplast biogenesis in maize.
    Biochim. Biophys. Acta, 2015. 1847(9): p. 1004-16
    [PMID:25725436]