PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G128953_P02
Common NameZEAMMB73_271825
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 146aa    MW: 17190.9 Da    PI: 9.8797
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G128953_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.7e-26959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRr g++KKA+E+ +LCda++ viifs +g++yeyss
  GRMZM2G128953_P02  9 KKIENPTNRQVTFSKRRMGLFKKANEVAILCDAQIGVIIFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box43.11.8e-15851441473
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                        +++  qe++++k+e + L+    +++ edL s s+++L +Leqq+e sl k+R +K+ell
  GRMZM2G128953_P02  85 QQKIVQEMTRMKDERNRLRMIMAQYMAEDLASFSVQDLSNLEQQIEFSLYKVRLRKQELL 144
                        68999*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.941161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28279IPR002100Transcription factor, MADS-box
CDDcd002652.72E-35276No hitNo description
PRINTSPR004041.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014868.4E-1381144IPR002487Transcription factor, K-box
PROSITE profilePS5129710.64285146IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MGHGKVELKK IENPTNRQVT FSKRRMGLFK KANEVAILCD AQIGVIIFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN RLRMIMAQYM AEDLASFSVQ  120
DLSNLEQQIE FSLYKVRLRK QELLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-16160160Myocyte-specific enhancer factor 2B
1tqe_Q6e-16160160Myocyte-specific enhancer factor 2B
1tqe_R6e-16160160Myocyte-specific enhancer factor 2B
1tqe_S6e-16160160Myocyte-specific enhancer factor 2B
6c9l_A6e-16160160Myocyte-specific enhancer factor 2B
6c9l_B6e-16160160Myocyte-specific enhancer factor 2B
6c9l_C6e-16160160Myocyte-specific enhancer factor 2B
6c9l_D6e-16160160Myocyte-specific enhancer factor 2B
6c9l_E6e-16160160Myocyte-specific enhancer factor 2B
6c9l_F6e-16160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G128953
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G128953_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9754250.0EU975425.1 Zea mays clone 490157 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400356.11e-105MADS-box transcription factor 31
SwissprotQ84NC22e-89MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A1D6HRZ71e-100A0A1D6HRZ7_MAIZE; Protein TRANSPARENT TESTA 16
STRINGAC233912.1_FGP0011e-103(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-40MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]