PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G129147_P01
Common NameGRF5, ZEAMMB73_679509, Zm.2746
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRF
Protein Properties Length: 374aa    MW: 40075.9 Da    PI: 8.8156
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G129147_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.6e-25109153145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  GRMZM2G129147_P01 109 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 153
                        79****************************************996 PP
2QLQ58.12.6e-205388237
                QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                        FTaaQ ++L++Q+l+yKyL+a++PvPp+Ll+++++
  GRMZM2G129147_P01 53 LFTAAQYEELEHQALIYKYLVAGVPVPPDLLLPLRR 88
                       6********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-105288IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0135388IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-145486IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.517109153IPR014977WRC domain
PfamPF088793.8E-21110152IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGMAMPFASP SPAADHRPSS LLPFCRAAPL SAAGEDAAQQ HAMSGRWAAR PALFTAAQYE  60
ELEHQALIYK YLVAGVPVPP DLLLPLRRGF VFHQPPALGY GPYFGKKVDP EPGRCRRTDG  120
KKWRCSKEAA PDSKYCERHM HRGRNRSRKP VEAQLAPPPH AQPQQQQQAP APAAGFQNHS  180
LYPSILTGNG GGGVGAGAGG GTFGLGPTSQ LHMDSAAAYA TAAGGGSKYL RYSAYGVKSL  240
SDEHSTLLSG GMDPSMMDNS WRLLPSQTNT FQATSYPVFG TLSGLDESTI ASLPKTQREP  300
LSFFGSDFVT AAKQENQTLR PFFDEWPKSR DSWPELGEDS SLGFSATQLS ISIPMATSDF  360
SNTSSRSPGG IPSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.27460.0ear| embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G129147
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G129147_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278580.0KJ727858.1 Zea mays clone pUT5949 GRF transcription factor (GRF5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400428.10.0putative growth-regulating factor 5 isoform X1
SwissprotQ6AWY61e-179GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLK7TNA30.0K7TNA3_MAIZE; GRF transcription factor
STRINGGRMZM2G129147_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-36growth-regulating factor 5