PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G129247_P02

Common Name

LOC100279460

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 238aa MW: 25039.1 Da PI: 5.4875

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G129247_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40.3	7e-13	175	220	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR RK+a+i+eLe v +Le+ +L e e GRMZM2G129247_P02 175 QRQKRMIKNRESAARSRDRKQAYIAELESQVMQLEEYQAELLTEQE 220 89*********************************99988876654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-7	171	235	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.979	173	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.7E-11	174	220	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.11E-16	175	220	No hit	No description
SuperFamily	SSF57959	3.59E-10	175	225	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.3E-12	176	224	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MASSRVMASS SPPQHAGAGS SSDLARFRSS GGIGSMNMDN IMREIYGPEA VNATVNGRVE 60 PSPAAPEAAA RRTSEEVWKE ISAAGGLSAP VLPPPPAAST GAGARGGGGG ASEMTLEDFL 120 ARDSCAMAAV MEGDMALGFP NCEGDAAGSV AGEAGGGRGS RKRALLDPAD RAVMQRQKRM 180 IKNRESAARS RDRKQAYIAE LESQVMQLEE YQAELLTEQE DRRQKRLKEV NIVFNIIA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.29744	0.0	endosperm\| meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G129247

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G129247_P02

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054276	0.0	BT054276.1 Zea mays full-length cDNA clone ZM_BFb0209M12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347900.1	1e-163	uncharacterized protein LOC100279460
Swissprot	Q0JHF1	1e-43	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	B7ZY84	1e-169	B7ZY84_MAIZE; Uncharacterized protein
STRING	GRMZM2G129247_P03	1e-162	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	1e-15	bZIP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G129247_P02
Entrez Gene	100279460

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]